List of genetic codes

Standard and alternative genetic codes From Wikipedia, the free encyclopedia

While there is much commonality, different parts of the tree of life use slightly different genetic codes.[1] When translating from genome to protein, the use of the correct genetic code is essential. The mitochondrial codes are the relatively well-known examples of variation. The translation table list below follows the numbering and designation by NCBI.[2] Four novel alternative genetic codes were discovered in bacterial genomes by Shulgina and Eddy using their codon assignment software Codetta, and validated by analysis of tRNA anticodons and identity elements;[3] these codes are not currently adopted at NCBI, but are numbered here 34-37, and specified in the table below.

  1. The standard code
  2. The vertebrate mitochondrial code
  3. The yeast mitochondrial code
  4. The mold, protozoan, and coelenterate mitochondrial code and the mycoplasma/spiroplasma code
  5. The invertebrate mitochondrial code
  6. The ciliate, dasycladacean and hexamita nuclear code
  7. The deleted kinetoplast code; cf. table 4.
  8. deleted, cf. table 1.
  9. The echinoderm and flatworm mitochondrial code
  10. The euplotid nuclear code
  11. The bacterial, archaeal and plant plastid code
  12. The alternative yeast nuclear code
  13. The ascidian mitochondrial code
  14. The alternative flatworm mitochondrial code
  15. The Blepharisma nuclear code[4]
  16. The chlorophycean mitochondrial code
  17. (none)
  18. (none)
  19. (none)
  20. (none)
  21. The trematode mitochondrial code
  22. The Scenedesmus obliquus mitochondrial code
  23. The Thraustochytrium mitochondrial code
  24. The Pterobranchia mitochondrial code
  25. The candidate division SR1 and gracilibacteria code
  26. The Pachysolen tannophilus nuclear code
  27. The karyorelict nuclear code
  28. The Condylostoma nuclear code
  29. The Mesodinium nuclear code
  30. The peritrich nuclear code
  31. The Blastocrithidia nuclear code
  32. The Balanophoraceae plastid code[4][5]
  33. The Cephalodiscidae mitochondrial code
  34. The Enterosoma code[3]
  35. The Peptacetobacter code[3]
  36. The Anaerococcus and Onthovivens code[3]
  37. The Absconditabacterales genetic code[3]

The alternative translation tables (2 to 37) involve codon reassignments that are recapitulated in the DNA and RNA codon tables.

Table summary

Comparison of alternative translation tables for all codons (using IUPAC amino acid codes):

Amino-acid biochemical properties Nonpolar Polar Basic Acidic Termination: stop codon *
More information Codon, Translation table ID (see above) ...
Codon Translation table ID (see above)
1234569101112131415162122232425262728293031323334353637
TTTFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
TTCFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
TTALLLLLLLLLLLLLLLL*LLLLLLLLLLLLLL
TTGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
TCTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
TCCSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
TCASSSSSSSSSSSSSSS*SSSSSSSSSSSSSSS
TCGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
TATYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
TACYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
TAA*****Q*****Y********QQYEE*Y****
TAG*****Q******QL*L****QQYEEW*****
TGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGA*WWWW*WC**WW**W**WG*WW**W*W***G
TGGWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
CTTLLTLLLLLLLLLLLLLLLLLLLLLLLLLLLL
CTCLLTLLLLLLLLLLLLLLLLLLLLLLLLLLLL
CTALLTLLLLLLLLLLLLLLLLLLLLLLLLLLLL
CTGLLTLLLLLLSLLLLLLLLLALLLLLLLLLLL
CCTPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
CCCPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
CCAPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
CCGPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
CATHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CACHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
CAGQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
CGTRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
CGCRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
CGARRRRRRRRRRRRRRRRRRRRRRRRRRRRRRW
CGGRRRRRRRRRRRRRRRRRRRRRRRRRRRRQWW
ATTIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
ATCIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
ATAIMMIMIIIIIMIIIMIIIIIIIIIIIIIIII
ATGMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
ACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
ACATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
ACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AAAKKKKKKNKKKKNKKNKKKKKKKKKKKKKKKK
AAGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
AGTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
AGCSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
AGAR*RRSRSRRRGSRRSRRSRRRRRRRRSRRRR
AGGR*RRSRSRRRGSRRSRRKRRRRRRRRKMRRR
GTTVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
GTCVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
GTAVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
GTGVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
GCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GATDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
GACDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
GAAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
GAGEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Close

Notes

Three translation tables have a peculiar status:

  • Table 7 is now merged into translation table 4.
  • Table 8 is merged to table 1; all plant chloroplast differences due to RNA edit.

The list of genetic codes provided by NCBI does not take into account the "special" two proteinogenic amino acids:

Other mechanisms also play a part in protein biosynthesis, such as post-transcriptional modification.

References

See also

Further reading

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