MethBase
From Wikipedia, the free encyclopedia
MethBase is a database of DNA methylation data derived from next-generation sequencing data.[1] MethBase provides a visualization of publicly available bisulfite sequencing and reduced representation bisulfite sequencing experiments through the UCSC Genome Browser. MethBase contents include single-CpG site resolution methylation levels for each CpG site in the genome of interest, annotation of regions of hypomethylation often associated with gene promoters, and annotation of allele-specific methylation associated with genomic imprinting.
DescriptionDatabase for single cytosine resolution DNA methylation data and associated annotations.
OrganismsHuman
Chimpanzee
Gorilla
Rhesus Macaque
Mouse
Arabidopsis
Chimpanzee
Gorilla
Rhesus Macaque
Mouse
Arabidopsis
LaboratoryAndrew D. Smith
Primary citationQiang Song et al. (2013) [1]
 | |
| Content | |
|---|---|
| Description | Database for single cytosine resolution DNA methylation data and associated annotations. |
| Organisms | Human Chimpanzee Gorilla Rhesus Macaque Mouse Arabidopsis |
| Contact | |
| Laboratory | Andrew D. Smith |
| Primary citation | Qiang Song et al. (2013) [1] |
| Release date | 2013 |
| Access | |
| Data format | Trackhub on the UCSC Genome Browser |
| Website | http://smithlabresearch.org/software/methbase/ |
