SETD2

Protein-coding gene in the species Homo sapiens From Wikipedia, the free encyclopedia

SET domain containing 2 is an enzyme that in humans is encoded by the SETD2 gene.[5][6][7]

PDBOrtholog search: PDBe RCSB
AliasesSETD2, HBP231, HIF-1, HIP-1, HYPB, KMT3A, SET2, p231HBP, HSPC069, LLS, SET domain containing 2
Quick facts Available structures, PDB ...
SETD2
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesSETD2, HBP231, HIF-1, HIP-1, HYPB, KMT3A, SET2, p231HBP, HSPC069, LLS, SET domain containing 2
External IDsOMIM: 612778; MGI: 1918177; HomoloGene: 56493; GeneCards: SETD2; OMA:SETD2 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_012271
NM_014159
NM_001349370

NM_001081340

RefSeq (protein)

NP_054878
NP_001336299

NP_001074809

Location (UCSC)Chr 3: 47.02 – 47.16 MbChr 9: 110.53 – 110.62 Mb
PubMed search[3][4]
Wikidata
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Function

SETD2 protein is a histone methyltransferase that is specific for lysine-36 of histone H3, and methylation of this residue is associated with active chromatin. This protein also contains a novel transcriptional activation domain and has been found associated with hyperphosphorylated RNA polymerase II.[7]

The trimethylation of lysine-36 of histone H3 (H3K36me3) is required in human cells for homologous recombinational repair and genome stability.[8] Depletion of SETD2 increases the frequency of deletion mutations that arise by the alternative DNA repair process of microhomology-mediated end joining.

Clinical significance

The SETD2 gene is located on the short arm of chromosome 3 and has been shown to play a tumour suppressor role in human cancer.[9]

Interactions

SETD2 has been shown to interact with Huntingtin.[10] Huntington's disease (HD), a neurodegenerative disorder characterized by loss of striatal neurons, is caused by an expansion of a polyglutamine tract in the HD protein huntingtin. SETD2 belongs to a class of huntingtin interacting proteins characterized by WW motifs.[7]

References

Further reading

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