SH3D21
Protein-coding gene in the species Homo sapiens
From Wikipedia, the free encyclopedia
SH3D21 is a nuclear protein that is encoded by the SH3D21 gene. In humans, this gene is located on chromosome 1 p34.3.[5] The human mRNA transcript is 2527 base pairs and the final protein product is 756 amino acids.[6] While the exact function of this protein remains unknown, due to the presence of three SH3 domains, it has been implicated in protein-protein interactions.[7]
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| Aliases | SH3D21, C1orf113, SH3 domain containing 21 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| External IDs | MGI: 1914188; HomoloGene: 12057; GeneCards: SH3D21; OMA:SH3D21 - orthologs | ||||||||||||||||||||||||||||||||||||||||||||||||||
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Gene
SH3D21 is expressed in low levels in most tissue.[8] Microarray analysis has shown SH3D21 expression to be decreased in TP63 knockout mice.[9] SH3D21 has been shown to be expressed highly in the superior cervical ganglion, the dorsal root ganglia and the trigeminal ganglion.[8][10] Transcription of SH3D21 is known to be upregulated in the presence of testosterone.[11]
Protein
SH3D21 contains three SH3 domains.[7][12][13] These domains are located near the N-terminus of the protein. In humans, these SH3 domains have a common amino acid sequence Asp-Glu-Leu. This sequence motif is also conserved in other species. SH3D21 has been found to interact with Adenylate Kinase 2, Artemin, and Importin 13.[5] The human protein has two isoforms and no paralogs.[6] The second isoform is 645 amino acids long and is identical to the first isoform, except it is missing the first 111 amino acids.[14] Due to this, the second isoform is missing the first, and half of the second, N-terminal SH3 domain.[14] Secondary structure analysis of SH3D21 indicates a long alpha helical structure near the C-terminus.[15][16] The purpose of this structure is unknown. SH3D21 is predicted to have many phosphorylation sites and multiple sumoylation sites throughout the entirety of the protein.[17][18]
Function
The function of this gene is still unclear. However, research has linked SH3D21 expression changes to male infertility and Ataxia Telangiectasia.[19][20] Further studies have implicated the chromosomal region of 1p34.3 in Intracranial Aneurysm and as a negative prognosis sign in colorectal cancer.[21][22] These studies do not, however, directly mention SH3D21.
Homology
SH3D21 is well-conserved in mammals. BLAST analysis found distant orthologs in Osteichthyes with a max identity of 28%.[23] Sequence identity was calculated using available sequence data and ALIGN software.[24]
| Species | Species common name | NCBI Accession Number (Protein) | Length (aa) | Sequence identity |
|---|---|---|---|---|
| Homo sapiens | Human | NP_001156002 | 756aa | 100% |
| Gorilla gorilla | Gorilla | XP_004025512 | 761 aa | 97.1% |
| Pongo abelii | Orangutan | XP_002811093 | 755aa | 94.9% |
| Macaca mulatta | Macaques | XP_001110607 | 755aa | 91.4% |
| Papia anubir | Olive Baboon | XP_003891645/ | 761aa | 91.2% |
| Saimiri boliviensis | Black Capped Squirrel Monkey | XP_003308029 | 650aa | 82.0% |
| Bos taurus | Cattle | NP_001156006 | 676aa | 58.70% |
| Cavia porcellus | Guinea pig | XP_003471528 | 658aa | 52.60% |
| Oreochromis niloticus | Nile Talapia | XP_003450596 | 505aa | 28.1% |