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SLC13A5

Protein-coding gene in humans From Wikipedia, the free encyclopedia

Solute carrier family 13 (sodium-dependent citrate transporter), member 5 also known as the Na+/citrate cotransporter or mIndy is a protein that in humans is encoded by the SLC13A5 gene.[5] It is the mammalian homolog of the fly Indy gene.

AliasesSLC13A5, EIEE25, NACT, mIndy, solute carrier family 13 member 5, INDY, DEE25
End6,713,377 bp[1]
Quick facts Identifiers, Aliases ...
SLC13A5
Identifiers
AliasesSLC13A5, EIEE25, NACT, mIndy, solute carrier family 13 member 5, INDY, DEE25
External IDsOMIM: 608305; MGI: 3037150; GeneCards: SLC13A5
Orthologs
DatabasesNCBI: entry; OMA: entry
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001143838
NM_001284509
NM_001284510
NM_177550

NM_001004148
NM_001372402
NM_001372403

RefSeq (protein)

NP_001137310
NP_001271438
NP_001271439
NP_808218

NP_001004148
NP_001359331
NP_001359332

Location (UCSC)Chr 17: 6.68 – 6.71 MbChr 11: 72.13 – 72.16 Mb
PubMed search[3][4]
Wikidata
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SymbolSLC13A5
StructuresSwiss-model
Quick facts NaCT, Identifiers ...
NaCT
Identifiers
SymbolSLC13A5
PDB7JSJ
UniProtQ86YT5
Search for
StructuresSwiss-model
DomainsInterPro
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Function

SLC13A5 is a tricarboxylate plasma transporter with a preference for citrate.[5]

Clinical significance

In 2014, by means of exome sequencing it was determined that a genetic mutation of the gene is the cause of a rare SLC13A5 Epilepsy.[6] Mutations in SLC13A5 cause autosomal recessive epileptic encephalopathy with seizure onset in the first days of life.[6] Those afflicted suffer from seizures, global developmental delay, movement disorder and hypotonia.

Reduced expression of homologous genes is associated with longer lifespan in Drosophila melanogaster and Caenorhabditis elegans,[7][8] and obesity protection in laboratory mice.[9] Increased expression is associated with type 2 diabetes and non-alcoholic fatty liver disease. A sugary diet upregulates the expression of the gene, and so does Interleukin 6 signaling.[10]

Small molecule inhibitors

There are four small-molecule inhibitors to SLC13A5 that have been reported from Pfizer[11][12] and a derivative from China Pharmaceutical University,[13] Boehringer Ingelheim and the group of Elisabeth P. Carpenter from the Centre for Medicines Discovery,[14] and Eternygen.[15] The Pfizer molecule is an orthosteric inhibitor that locks the protein in an inward-facing state of the reaction cycle,[16] while the mechanism of action for other inhibitors remains unknown.

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