UPF1

Protein-coding gene in the species Homo sapiens From Wikipedia, the free encyclopedia

Regulator of nonsense transcripts 1 (or Up-frameshift suppressor 1 homolog[5]) is a protein that in humans is encoded by the UPF1 gene.[6][7]

PDBOrtholog search: PDBe RCSB
AliasesUPF1, HNORF1, RENT1, pNORF1, smg-2, RNA helicase and ATPase, UPF1 RNA helicase and ATPase, UTF
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UPF1
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesUPF1, HNORF1, RENT1, pNORF1, smg-2, RNA helicase and ATPase, UPF1 RNA helicase and ATPase, UTF
External IDsOMIM: 601430; MGI: 107995; HomoloGene: 2185; GeneCards: UPF1; OMA:UPF1 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_002911
NM_001297549

NM_001122829
NM_030680

RefSeq (protein)

NP_001284478
NP_002902
NP_001284478.1

NP_001116301
NP_109605

Location (UCSC)Chr 19: 18.83 – 18.87 MbChr 8: 70.78 – 70.81 Mb
PubMed search[3][4]
Wikidata
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Function

This gene encodes a protein that is part of a post-splicing multiprotein complex, the exon junction complex, involved in both mRNA nuclear export and mRNA surveillance. mRNA surveillance detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD). When translation ends upstream from the last exon-exon junction, this triggers NMD to degrade mRNAs containing premature stop codons. This protein is located in both the cytoplasm and nucleus.[8] When translation ends, it interacts with the functional homolog of yeast Upf2p to trigger mRNA decapping. Use of multiple polyadenylation sites has been noted for this gene.[9]

Interactions

UPF1 interacts with:

References

Further reading

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