User:RenaMoonn/Workspace
From Wikipedia, the free encyclopedia
This list of sequenced animal mitochondrial genomes contains animals which had their mitochondrial genome assembled and deposited in a public database. With the exception of a few extinct organisms (denoted by a †), all genomes in this list are annotated and complete. For the mitochondrial genomes of other eukaryotes, see lists of sequenced mitochondrial genomes. For the genomes of all kingdoms, see list of sequenced genomes.
A compilation of most complete mitochondrial genomes is maintained by the NCBI in a public repository.[1]
This list currently contains 60+ partial or complete mitochondrial genomes of extinct animals.
Cylindraspis species
Porifera (Sponges)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6040 (64)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Ctenophora (Comb jellies)
Tentaculata
Order Cydippida
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Cydippidae | Hormiphora californiensis | NC_045864.1 | 12564 bp | Complete Genome | [2] |
Order Lobata
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Bolinopsidae | Mnemiopsis leidyi | NC_016117.1 | 10326 bp | Complete Genome | [3] |
Nuda
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Beroidae | Beroe cucumis | NC_038065.1 | 10487 bp | Complete Genome | [4] |
| Beroe forskalii | NC_045305.1 | 13338 bp | Complete Genome | [5] |
Placozoa
Placozoa is a very understudied phylum, so expect more mitochondrial genomes. Additionally, the systematics of this section may change. If that's the case, you will need to reorganize the charts.
Polyplacotomia
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Polyplacotoma mediterranea | NC_041549.1 | 23462 bp | Complete Genome | [6] |
Uniplacotomia
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Trichoplax adhaerens | NC_008151.3 | 43079 bp | Complete Genome | [7] |
| Placozoan sp. BZ10101 | NC_008832.4 | 32661 bp | Complete Genome | [8] |
| Placozoan sp. BZ49 | NC_008833.4 | 37194 bp | Complete Genome | [9] |
| Placozoan sp. BZ2423 | NC_008834.4 | 36699 bp | Complete Genome | [10] |
| Placozoan sp. 'Shirahama' | NC_015309.1 | 36676 bp | Complete Genome | [11] |
Cnidaria
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6073 (355)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Xenacoelomorpha
Genus Xenoturbella
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Xenoturbella bocki | NC_008556.1 | 15234 bp | Complete Genome | [12] |
| Xenoturbella churro | NC_029217.1 | 15339 bp | Complete Genome | [13] |
| Xenoturbella hollandorum | NC_029218.1 | 15210 bp | Complete Genome | [14] |
| Xenoturbella japonica | NC_036763.1 | 15249 bp | Complete Genome | [15] |
| Xenoturbella monstrosa | NC_029219.1 | 15279 bp | Complete Genome | [16] |
| Xenoturbella profunda | NC_029220.1 | 15403 bp | Complete Genome | [17] |
Acoelomorpha
Order Acoela
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Convolutidae | Symsagittifera roscoffensis
(Mint-sauce worm) |
NC_014578.1 | 14803 bp | Complete Genome | [18] |
| Paratomellidae | Paratomella rubra | NC_034946.1 | 14954 bp | Complete Genome | [19] |
| Isodiametridae | Baltalimania ylvae | NC_034947.1 | 16619 bp | Complete Genome | [20] |
| Isodiametra pulchra | NC_034948.1 | 18725 bp | Complete Genome | [21] |
Cephalochordata (Lancelets)
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Branchiostomatidae | Asymmetron inferum | NC_009774.1 | 15084 bp | Complete Genome | [22] |
| Asymmetron lucayanum | NC_006464.1 | 15102 bp | Complete Genome | [23] | |
| Asymmetron sp. A TK-2007 | NC_009775.1 | 15050 bp | Complete Genome | [24] | |
| Branchiostoma belcheri
(Belcher's lancelet) |
NC_004537.1 | 15076 bp | Complete Genome | [25] | |
| Branchiostoma floridae
(Florida lancelet) |
NC_000834.1 | 15083 bp | Complete Genome | [26] | |
| Branchiostoma japonicum
(Japanese lancelet) |
NC_008069.1 | 15075 bp | Complete Genome | [27] | |
| Branchiostoma lanceolatum
(European lancelet) |
NC_001912.1 | 15076 bp | Complete Genome | [28] | |
| Epigonichthys cultellus | NC_026836.1 | 14991 bp | Complete Genome | [29] | |
| Epigonichthys maldivensis | NC_006465.1 | 14975 bp | Complete Genome | [30] |
Tunicates
Acopa
Order Stolidobranchia
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Pyuridae | Halocynthia aurantium
(Sea peach) |
NC_053533.1 | 14979 bp | Complete Genome | [31] |
| Halocynthia roretzi
(Sea pineapple) |
NC_002177.1 | 14771 bp | Complete Genome | [32] | |
| Halocynthia spinosa | NC_021466.1 | 15074 bp | Complete Genome | [33] | |
| Herdmania momus | NC_013561.1 | 15816 bp | Complete Genome | [34] | |
| Microcosmus sulcatus | NC_013752.1 | 15028 bp | Complete Genome | [35] | |
| Pyura gangelion | NC_021465.1 | 14418 bp | Complete Genome | [36] | |
| Pyura mirabilis | NC_079570.1 | 15778 bp | Complete Genome | [37] | |
| Styelidae | Botrylloides giganteus | NC_024104.1 | 14323 bp | Complete Genome | [38] |
| Botrylloides leachii | NC_024103.1 | 14408 bp | Complete Genome | [39] | |
| Botrylloides nigrum | NC_021467.1 | 14427 bp | Complete Genome | [40] | |
| Botrylloides violaceus
(Chain tunicate) |
NC_024256.1 | 14357 bp | Complete Genome | [41] | |
| Botryllus schlosseri
(Golden star tunicate) |
NC_021463.1 | 14928 bp | Complete Genome | [42] | |
| Polycarpa mytiligera | NC_021464.1 | 14424 bp | Complete Genome | [43] | |
| Styela clava
(Clubbed tunicate) |
NC_037072.1 | 14616 bp | Complete Genome | [44] | |
| Styela plicata
(Pleated sea squirt) |
NC_013565.1 | 14414 bp | Complete Genome | [45] |
Enterogona
Order Phlebobranchia
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Ascidiidae | Ascidiella aspersa | NC_021469.1 | 17146 bp | Complete Genome | [46] |
| Phallusia fumigata | NC_009834.1 | 15535 bp | Complete Genome | [47] | |
| Phallusia mammillata | NC_009833.1 | 14579 bp | Complete Genome | [48] | |
| Ciona intestinalis clade B CG-2006 | NC_017929.1 | 14591 bp | Complete Genome | [49] | |
| Cionidae | Ciona robusta | NC_034372.1 | 14790 bp | Complete Genome | [50] |
| Ciona savignyi | NC_004570.1 | 14737 bp | Complete Genome | [51] | |
| Corellidae | Rhodosoma turcicum | NC_021468.1 | 14677 bp | Complete Genome | [52] |
Order Aplousobranchia
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Clavelinidae | Clavelina lepadiformis
(Light-bulb sea squirt) |
NC_012887.1 | 14484 bp | Complete Genome | [53] |
| Clavelina phlegraea | NC_024105.1 | 14603 bp | Complete Genome | [54] | |
| Didemnidae | Didemnum vexillum | NC_026107.1 | 13424 bp | Complete Genome | [55] |
| Polyclinidae | Aplidium conicum | NC_013584.1 | 15183 bp | Complete Genome | [56] |
Vertebrates
Ray-Finned Fish (Excluding Teleosts)
Cladistia
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=1338366 (11)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Chondrostei
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=32440 (32)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Family Acipenseridae
(Sturgeons) |
Pseudoscaphirhynchus fedtschenkoi (Syr Darya shovel-nose sturgeon)
Likely Extinct |
NC_058991.1 | 16613 bp | Complete Genome | [57][58] |
| Polyodontidae
(Paddlefish) |
† Psephurus gladius
(Chinese paddlefish) |
NC_005834.1 | 16483 bp | Complete Genome | [59][60] |
Holostei
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=1489100 (7)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Lobe-Finned Fish (Excluding Tetrapods)
Actinistia (Coelacanths)
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Latimeriidae | Latimeria chalumnae
(West Indian Ocean coelacanth) |
NC_001804.1 | 16407 bp | Complete Genome | [25] |
| Latimeria menadoensis
(Indonesian coelacanth) |
NC_006921.2 | 16446 bp | Complete Genome | [61] |
Dipnoi (Lungfish)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Neoceratodontidae | Neoceratodus forsteri
(Australian lungfish) |
NC_003127.1 | 16572 bp | Complete Genome | [62] |
| Lepidosirenidae | Lepidosiren paradoxa
(South American lungfish) |
NC_003342.1 | 16403 bp | Complete Genome | [63] |
| Protopteridae | Protopterus aethiopicus
(Marbled lungfish) |
NC_014764.2 | 15873 bp | Complete Genome | [64] |
| Protopterus annectens
(West-African lungfish) |
NC_018822.1 | 16657 bp | Complete Genome | [65] | |
| Protopterus dolloi
(Spotted lungfish) |
NC_001708.1 | 16646 bp | Complete Genome | [66] |
Amphibians
Anura (Frogs)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8342 (231)
Urodela (Salamanders)
Sirenoidea
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Sirenidae | Siren lacertina
(Greater siren) |
NC_036927.1 | 16545 bp | Complete Genome | [67] |
Salamandroidea
sal https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8314 (32)
ple https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8332 21)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Salamandridae | |||||
| Ambystomatidae | Ambystoma andersoni
(Anderson's salamander) |
NC_006888.1 | 16370 bp | Complete Genome | [68] |
| Ambystoma barbouri
(Streamside salamander) |
NC_014568.1 | 16365 bp | Complete Genome | [69] | |
| Ambystoma bishopi
(Reticulated flatwoods salamander) |
NC_027501.1 | 16361 bp | Complete Genome | [70] | |
| Ambystoma californiense
(California tiger salamander) |
NC_006890.1 | 16374 bp | Complete Genome | [71] | |
| Ambystoma dumerilii
(Achoque) |
NC_006889.1 | 16370 bp | Complete Genome | [72] | |
| Ambystoma laterale
(Blue-spotted salamander) |
NC_006330.1 | 16367 bp | Complete Genome | [73] | |
| Ambystoma mexicanum
(Axolotl) |
NC_005797.1 | 16369 bp | Complete Genome | [74] | |
| Ambystoma talpoideum
(Mole salamander) |
NC_039182.1 | 16358 bp | Complete Genome | [75] | |
| Ambystoma texanum
(Small-mouth salamander) |
NC_014571.1 | 16367 bp | Complete Genome | [76] | |
| Ambystoma tigrinum
(Tiger salamander) |
NC_006887.1 | 16375 bp | Complete Genome | [77] | |
| Ambystoma unisexual lineage LJJJ | NC_014572.1 | 16367 bp | Complete Genome | [78] | |
| Proteidae | Necturus beyeri
(Western waterdog) |
NC_023341.1 | 16284 bp | Complete Genome | [79] |
| Proteus anguinus
(Olm) |
NC_023342.1 | 16584 bp | Complete Genome | [80] | |
| Plethodontidae | |||||
Gymnophiona (Caecilians)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8445 (33)
Birds
Palaeognathae (Ratites)
Order Struthioniformes
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Struthio camelus
(Common ostrich) |
NC_002785.1 | 16595 bp | Complete Genome | [81] |
Order Dinornithiformes (Moas)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Dinornithidae
(Giant Moas) |
† Dinornis sp. | NC_002672.1 | 17070 bp | Complete Genome | [82][83] |
| Emeidae
(Lesser Moas) |
† Anomalopteryx didiformis
(Little bush moa) |
NC_002779.1 | 16716 bp | Complete Genome | [84][85] |
| † Emeus crassus
(Eastern moa) |
NC_002673.1 | 17061 bp | Complete Genome | [86][83] |
Family Tinamidae (Tinamous)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Tinaminae
(Forrest tinamous) |
Nothocercus julius
(Tawny-breasted tinamou) |
NC_052818.1 | 16695 bp | Complete Genome | [87] |
| Nothocercus nigrocapillus
(Hooded tinamou) |
NC_052819.1 | 16637 bp | Complete Genome | [88] | |
| Tinamus guttatus
(White-throated tinamou) |
NC_027260.1 | 16750 bp | Complete Genome | [89] | |
| Tinamus major
(Great tinamou) |
NC_002781.3 | 16701 bp | Complete Genome | [90] | |
| Crypturellus cinnamomeus
(Thicket tinamou) |
NC_052825.1 | 16870 bp | Complete Genome | [91] | |
| Crypturellus soui
(Little tinamou) |
NC_052773.1 | 16705 bp | Complete Genome | [92] | |
| Crypturellus undulatus
(Undulated tinamou) |
NC_052774.1 | 17096 bp | Complete Genome | [93] | |
| Nothurinae
(Aridland tinamous) |
Eudromia elegans
(Elegant-crested tinamou) |
NC_002772.2 | 18305 bp | Complete Genome | [94] |
| Nothoprocta ornata
(Ornate tinamou) |
NC_052820.1 | 17012 bp | Complete Genome | [95] | |
| Nothoprocta pentlandii
(Andean tinamou) |
NC_052821.1 | 17013 bp | Complete Genome | [96] | |
| Nothoprocta perdicaria
(Chilean tinamou) |
NC_052826.1 | 16964 bp | Complete Genome | [97] |
Order Rheiformes
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Rheidae | Rhea americana
(Greater rhea) |
NC_000846.1 | 16714 bp | Complete Genome | [98] |
| Rhea pennata
(Lesser rhea) |
NC_002783.2 | 16749 bp | Complete Genome | [99] |
Family Apterygidae (Kiwis)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Apteryx maxima
(Great spotted kiwi) |
NC_002782.2 | 16980 bp | Complete Genome | [100] |
| Apteryx owenii
(Little spotted kiwi) |
NC_013806.1 | 17020 bp | Complete Genome | [101] |
| Apteryx rowi
(Ōkārito kiwi) |
NC_052824.1 | 16972 bp | Complete Genome | [102] |
Family Casuariidae
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Casuarius casuarius
(Southern cassowary) |
NC_002778.2 | 16756 bp | Complete Genome | [103] |
| Dromaius novaehollandiae novaehollandiae
(Common emu) |
NC_002784.1 | 16711 bp | Complete Genome | [104] |
| Dromaius novaehollandae baudinianus
(Kangaroo island emu) |
NC_045365.1 | 16713 bp | Complete Genome | [105] |
Galloanseres (Fowl)
Order Galliformes (Landfowl)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8976&type=Mitochondrion (72)
| Family | Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|---|
Order Anseriformes (Waterfowl)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8826 (44)
| Family | Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|---|
| Anhimidae
(Screamers) |
Chauna torquata
(Southern Screamer) |
NC_052807.1 | 16766 bp | Complete Genome | [106] | |
| Anseranatidae | Anseranas semipalmata
(Magpie "goose") |
NC_005933.1 | 16870 bp | Complete Genome | [107] | |
| Anatidae | Dendrocygninae | |||||
| Stictonettinae | ||||||
Neoaves
Mirandornithes
Family Podicipedidae (Grebes)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Podiceps cristatus
(Great crested grebe) |
NC_008140.1 | 16134 bp | Complete Genome | [108] |
| Tachybaptus novaehollandiae
(Australasian grebe) |
NC_010095.1 | 18002 bp | Complete Genome | [109] |
| Tachybaptus ruficollis
(Little grebe) |
NC_024594.1 | 16688 bp | Complete Genome | [110] |
Order Phoenicopteriformes
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Phoenicopteridae
(Flamingos) |
Phoenicopterus roseus
(Greater flamingo) |
NC_010089.1 | 17446 bp | Complete Genome | [111] |
| Phoenicopterus ruber
(American flamingo) |
NC_027934.1 | 17476 bp | Complete Genome | [112] |
Columbimorphae
Family Columbidae
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8929 (29)
| Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| † Alopecoenas salamonis
(Thick-billed ground dove) |
NC_031871.1 (RefSeq) | 17141 bp | Complete Genome | [113][114] |
| † Caloenas maculata
(Spotted green pigeon) |
NC_031870.1 (RefSeq) | 17036 bp | Complete Genome | [115][114] |
| † Columba jouyi
(Ryukyu wood pigeon) |
NC_031868.1 (RefSeq) | 17179 bp | Complete Genome | [116][114] |
| † Ectopistes migratorius
(Passenger pigeon) |
KU158192.1 (Genebank) | 17014 bp | Complete Genome | [117][118] |
| † Pezophaps solitaria
(Rodrigues solitaire) |
KX902238.1 (Genebank) | 16644 bp | Conflicting Status | [119][114] |
| † Raphus cucullatus
(Dodo) |
NC_031864.1 (RefSeq) | 17092 bp | Complete Genome | [120][114] |
Family Pteroclidae (Sandgrouse)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Pterocles burchelli
(Burchell's sandgrouse) |
NC_052814.1 | 18290 bp | Complete Genome | [121] |
Otidimorphae
Family Cuculiformes (Cuckoos)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8940 (11)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
Family Musophagidae (Turacos)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Corythaixoides concolor
(Grey go-away-bird) |
NC_052806.1 | 16967 bp | Complete Genome | [122] |
| Tauraco livingstonii
(Livingstone's turaco) |
NC_081048.1 | 19015 bp | Complete Genome | [123] |
Family Otididae (Bustards)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Otis tarda
(Great bustard) |
NC_014046.1 | 16849 bp | Complete Genome | [124] |
| Ardeotis kori
(Kori bustard) |
NC_052775.1 | 17288 bp | Complete Genome | [125] |
Strisores
Family Caprimulgidae (Nightjars)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Caprimulgus indicus
(Jungle nightjar) |
NC_086816.1 | 16778 bp | Complete Genome | [126] |
Genus Steatornis (Oilbirds)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Steatornis caripensis
(Guácharo) |
NC_052823.1 | 16908 bp | Complete Genome | [127] |
Genus Aegotheles (Owlet-nightjars)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Aegotheles bennettii
(Barred owlet-nightjar) |
NC_052816.1 | 16810 bp | Complete Genome | [128] |
| Aegotheles cristatus
(Australian owlet-nightjar) |
NC_011718.2 | 16914 bp | Complete Genome | [129] |
Order Apodiformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8892 (19)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Gruiformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9108 (43)
† Nesotrochis steganinos (Haitian cave‑rail)
- NC_054210.1
- 15576 bp
- Complete Genome
- https://www.ncbi.nlm.nih.gov/nuccore/NC_054210.1
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Aptornithidae
(Adzebills) |
† Aptornis otidiformis
(North Island adzebill) |
MK434262.1 (Genebank) | 15491 bp | Partial Genome | [130][131] |
| † Aptornis defossor
(South Island adzebill) |
MK434264.1 (Genebank) | 15465 bp | Partial Genome | [132][131] |
Order Charadriiformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8906 (79)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Alcidae
(Auks) |
† Pinguinus impennis
(Great auk) |
NC_031347.1 | 16784 bp | Complete Genome | [133][118] |
Phaethoquornithes
Order Phaethontiformes
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Phaethontidae
(Tropicbirds) |
Phaethon lepturus
(White-tailed tropicbird) |
NC_027275.1 | 17773 bp | Complete Genome | [134] |
| Phaethon rubricauda
(Red-tailed tropicbird) |
NC_007979.1 | 17777 bp | Complete Genome | [135] |
Order Eurypygiformes
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Rhynochetidae
(Kagus) |
Rhynochetos jubatus
(Kagu) |
NC_010091.1 | 16937 bp | Complete Genome | [136] |
Order Gaviiformes
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Gaviidae
(Loons) |
Gavia arctica
(Black-throated loon) |
NC_041165.1 | 17066 bp | Complete Genome | [137] |
| Gavia pacifica
(Pacific loon) |
NC_008139.1 | 15574 bp | Complete Genome | [138] | |
| Gavia stellata
(Red-throated loon) |
NC_007007.1 | 17573 bp | Complete Genome | [139] |
Order Procellariiformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=30449 (14)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Sphenisciformes (Penguins)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9230 (12)
† Eudyptes warhami (Chatham crested penguin)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Family Ciconiidae (Storks)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Ciconia boyciana
(Oriental stork) |
NC_002196.1 | 17622 bp | Complete Genome | [140] |
| Ciconia ciconia
(White stork) |
NC_002197.1 | 17347 bp | Complete Genome | [141] |
| Ciconia nigra
(Black stork) |
NC_023946.1 | 17795 bp | Complete Genome | [142] |
Order Suliformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=3073854 (6)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Pelecaniformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9205 (28)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Telluraves
Order Strigiformes (Owls)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=30458 (14)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Accipitriformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=2558200 (30)
† Hieraaetus moorei (Haast's eagle)
- MK294166.1
- 17272 bp
- Partial Genome
- https://www.ncbi.nlm.nih.gov/nuccore/1588055484
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Family Coliidae (Mousebirds)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Colius striatus
(Spotted mousebird) |
NC_052772.1 | NC_052772.1 | 17283 bp | [143] |
| Urocolius indicus
(Red-faced mousebird) |
NC_052817.1 | NC_052817.1 | 17267 | [144] |
Family Trogonidae (Trogons and quetzals)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Trogon viridis
(Green-backed trogon) |
NC_011714.1 | NC_011714.1 | 17751 bp | [145] |
| Trogon melanurus
(Black-faced trogon) |
NC_052802.1 | NC_052802.1 | 17280 bp | [146] |
Order Bucerotiformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=57379 (9)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Coraciiformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8936 (14)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Piciformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9219 (23)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Picidae
(Woodpeckers) |
† Campephilus imperialis
(Imperial woodpecker) |
NC_034278.1 | 16858 bp | Complete Genome | [147][118] |
Order Falconiformes (Falcons)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8948 (15)
† Caracara creightoni (Bahaman caracara)
- NC_044674.1
- 16931 bp
- Complete Genome
- https://www.ncbi.nlm.nih.gov/nuccore/NC_044674.1
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Psittaciformes (Parrots)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9223 (88)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Psittaculidae
(Old World parrots) |
† Psephotellus pulcherrimus
(Paradise parrot) |
NC_031358.1 | 17130 bp | Complete Genome | [148][118] |
Order Passeriformes (Passerines)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9126 (501)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Callaeidae | Callaeas cinereus
(South Island kōkako) Possibly Extinct |
NC_031350.1 | 16711 bp | Complete Genome | [149][118] |
| † Heteralocha acutirostris (Huia) | NC_031351.1 | 16766 bp | Complete Genome | [150][118] | |
| Carduelinae | † Psittirostra psittacea (ʻŌʻū) | NC_031353.1 | 16841 bp | Complete Genome | [151][118] |
| † Akialoa obscura (Lesser 'akialoa) | NC_031349.1 | 16838 bp | Complete Genome | [152][118] | |
| Mohoidae | † Moho braccatus (Kauaʻi ʻōʻō) | NC_031348.1 | 16804 bp | Complete Genome | [153][118] |
| Oriolidae | † Turnagra capensis (South Island piopio) | NC_028336.1 | 16994 bp | Complete Genome | [154][155] |
| Turdidae | † Myadestes myadestinus (Kāmaʻo) | NC_031352.1 | 16641 bp | Complete Genome | [156][118] |
Crocodilians
Family Alligatoridae
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Alligatorinae
(Alligators) |
Alligator mississipiensis
(American aligator) |
NC_001922.1 | 16646 bp | Complete Genome | [157] |
| Alligator sinensis
(Chinese alligator) |
Unable to find deposited genome sequence | 16746 bp | Complete Genome | [158] | |
| Caimaninae
(Caimans) |
Paleosuchus palpebrosus
(Cuvier's dwarf caiman) |
NC_009729.1 | 14935 bp | Complete Genome | [159] |
| Paleosuchus trigomatus
(Smooth-fronted caiman) |
NC_009732.1 | 15948 bp | Complete Genome | [160] | |
| Caiman crocodilus
(Spectacled caiman) |
NC_002744.2 | 17900 bp | Complete Genome | [161] |
Family Gavialidae
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Gavialinae | Gavialis gangeticus
(Gharial) |
NC_008241.1 | 17185 bp | Complete Genome | [162] |
| Tomistominae | Tomistoma schlegelii
(False gharial) |
NC_011074.1 | 16345 bp | Complete Genome | [163] |
Family Crocodylidae
| Subamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Osteolaeminae | Osteolaemus tetraspis
(Dwarf crocodile) |
NC_009728.1 | 16814 bp | Complete Genome | [164] |
| Osteolaemus osborni
(Osborn's dwarf crocodile) |
MN885917.1 | 16285 bp | Complete Genome | [165] | |
| Mecistops cataphractus
(West African slender-snouted crocodile) |
NC_010639.1 | 16847 bp | Complete Genome | [166] | |
| Crocodylinae | † Voay robustus
(Malagasy horned crocodile) |
n/a | Unknown | Partial Genome | [167][168] |
| Crocodylus johnstoni
(Freshwater crocodile) |
NC_015238.2 | 16851 bp | Complete Genome | [169] | |
| Crocodylus novaeguineae
(New Guinea crocodile) |
NC_015651.1 | 16894 bp | Complete Genome | [170] | |
| Crocodylus mindorensis
(Philippine crocodile) |
NC_014670.1 | 16939 bp | Complete Genome | [171] | |
| Crocodylus porosus
(Saltwater crocodile) |
NC_008143.1 | 16916 bp | Complete Genome | [172] | |
| Crocodylus siamensis
(Siamese crocodile) |
NC_008795.1 | 16836 bp | Complete Genome | [173] | |
| Crocodylus palustris
(Mugger crocodile) |
NC_014706.1 | 17052 bp | Complete Genome | [174] | |
| Crocodylus niloticus
(Nile crocodile) |
NC_008142.1 | 16830 bp | Complete Genome | [175] | |
| Crocodylus rhombifer
(Cuban crocodile) |
NC_024513.1 | 16795 bp | Complete Genome | [176] | |
| Crocodylus intermedius
(Orinoco crocodile) |
NC_015648.1 | 16828 bp | Complete Genome | [177] | |
| Crocodylus acutus
(American crocodile) |
NC_015647.1 | 16883 bp | Complete Genome | [178] | |
| Crocodylus moreletii
(Morlett's crocodile) |
NC_015235.1 | 16827 bp | Complete Genome | [179] |
Turtles
Cryptodira (Hidden-necked turtles)
Trionychia (Softshell Turtles)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Carettochelyidae | Carettochelys insculpta
(Pig-nosed turtle) |
NC_014048.1 | 16439 bp | Complete Genome | [180] |
| Trionychidae | Lissemys scutata
(Burmese flapshell turtle) |
NC_025494.1 | 16512 bp | Complete Genome | [181] |
| Lissemys punctata
(Indian flapshell turtle) |
NC_012414.1 | 16490 bp | Complete Genome | [182] | |
| Amyda cartilaginea
(Asiatic softshell turtle) |
NC_054232.1 | 16763 bp | Complete Genome | [183] | |
| Apalone ferox
(Florida softshell turtle) |
NC_014054.1 | 16866 bp | Complete Genome | [184] | |
| Apalone spinifera
(Spiny softshell turtle) |
NC_021371.1 | 16749 bp | Complete Genome | [185] | |
| Chitra indica
(Indian narrow-headed softshell turtle) |
NC_026028.1 | 16726 bp | Complete Genome | [186] | |
| Chitra vandijki
(Burmese narrow-headed softshell turtle) |
NC_053617.1 | 16614 bp | Complete Genome | [187] | |
| Dogania subplana
(Malayan softshell turtle) |
NC_002780.1 | 17289 bp | Complete Genome | [188] | |
| Nilssonia nigricans
(Black softshell turtle) |
NC_039559.1 | 16796 bp | Complete Genome | [189] | |
| Palea steindachneri
(Wattle-necked softshell turtle) |
NC_013841.1 | 17243 bp | Complete Genome | [190] | |
| Pelochelys cantorii
(Asian giant softshell turtle) |
NC_015825.1 | 17499 bp | Complete Genome | [191] | |
| Pelodiscus axenaria
(Hunan softshell turtle) |
NC_085344.1 | 17143 bp | Complete Genome | [192] | |
| Pelodiscus maackii
(Amur softshell turtle) |
NC_088426.1 | 16258 bp | Complete Genome | [193] | |
| Pelodiscus parviformis
(Lesser Chinese softshell turtle) |
NC_069866.1 | 17095 bp | Complete Genome | [194] | |
| Pelodiscus shipian | NC_069867.1 | 17300 bp | Complete Genome | [195] | |
| Pelodiscus sinensis
(Chinese softshell turtle) |
NC_068236.1 | 17042 bp | Complete Genome | [196] | |
| Rafetus swinhoei
(Yangtze giant softshell turtle) |
NC_017901.1 | 16990 bp | Complete Genome | [197] | |
| Trionyx triunguis
(African softshell turtle) |
NC_012833.1 | 16590 bp | Complete Genome | [198] |
Testudinoidea
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8486 (69)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Testudinae
(Tortoises) |
† Chelonoidis alburyorum
(Bahamas giant tortoise) |
LT599482.1 (GeneBank) | 15328 bp | Partial Genome | [199][200] |
Chelonioidea (Sea Turtles)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Cheloniidae | Chelonia mydas
(Green sea turtle) |
NC_000886.1 | 16497 bp | Complete Genome | [201] |
| Eretmochelys imbricata
(Hawksbill sea turtle) |
NC_012398.1 | 16478 bp | Complete Genome | [202] | |
| Natator depressus
(Flatback sea turtle) |
NC_018550.1 | 16281 bp | Complete Genome | [203] | |
| Lepidochelys olivacea
(Olive ridley sea turtle) |
NC_028634.1 | 16718 bp | Complete Genome | [204] |
Chelydroidea
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Chelydridae | Chelydra serpentina
(Common snapping turtle) |
NC_011198.1 | 16631 bp | Complete Genome | [205] |
| Macrochelys temminckii
(Alligator snapping turtle) |
NC_009260.1 | 16569 bp | Complete Genome | [206] | |
| Kinosternidae | Kinosternon leucostomum
(White-lipped mud turtle) |
NC_014577.1 | 16559 bp | Complete Genome | [207] |
| Sternotherus carinatus
(Razor-backed musk turtle) |
NC_017607.1 | 16554 bp | Complete Genome | [208] |
Pleurodira (Side-necked turtles)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8460 (33)
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Rhynchocephalia
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Sphenodontidae | Sphenodon punctatus
(Tuatara) |
NC_004815.1 | 15181 bp | Complete Genome | [209] |
Squamates
Gekkota (Geckos)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8560 (38)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Scinciformata
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=35033 (21)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Laterata
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=1329976 (71)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Toxicofera
Anguimorpha
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8548 (16)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Iguania
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8511 (59)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Serpentes (Snakes)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=8570 (141)
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0291432 Hemachatus nyangensis (Nyanga rinkhals), possibly extinct
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Mammals
Monotremes
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Ornithorhynchidae
(Platypuses) |
Ornithorhynchus anatinus
(Platypus) |
NC_000891.1 | 17019 bp | Complete Genome | [210] |
| Tachyglossidae (Echidnas) | Tachyglossus aculeatus
(Short-beaked echidna) |
NC_003321.1 | 16360 bp | Complete Genome | [211] |
| Zaglossus bruijni
(Western long-beaked echidna) |
NC_006364.1 | 16367 bp | Complete Genome | [212] |
Marsupials
Order Paucituberculata
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Caenolestidae
(Shrew opossums) |
Caenolestes fuliginosus
(Tate's shrew opossum) |
NC_005828.1 | 16629 bp | Complete Genome | [213] |
| Rhyncholestes raphanurus
(Chilean shrew opossum) |
NC_005829.1 | 16727 bp | Complete Genome | [214] |
Family Didelphidae (Opossums)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Didelphis albiventris
(White-eared opossum) |
NC_057515.1 | 17341 bp | Complete Genome | [215] |
| Didelphis aurita
(Big-eared opossum) |
NC_057516.1 | 17165 bp | Complete Genome | [216] |
| Didelphis imperfecta
(Guianan white-eared opossum) |
NC_057517.1 | 17161 bp | Complete Genome | [217] |
| Didelphis marsupialis
(Common opossum) |
NC_057518.1 | 17157 bp | Complete Genome | [218] |
| Didelphis pernigra
(Andean white-eared opossum) |
NC_057519.1 | 17427 bp | Complete Genome | [219] |
| Didelphis virginiana
(Virginia opossum) |
NC_001610.1 | 17084 bp | Complete Genome | [220] |
| Gracilinanus agilis
(Agile gracile opossum) |
NC_054268.1 | 16336 bp | Complete Genome | [221] |
| Lutreolina crassicaudata
(Big lutrine opossum) |
NC_057520.1 | 17265 bp | Complete Genome | [222] |
| Metachirus nudicaudatus
(Brown four-eyed opossum) |
NC_006516.1 | 15882 bp | Complete Genome | [223] |
| Monodelphis domestica
(Grey short-tailed opossum) |
NC_006299.1 | 17079 bp | Complete Genome | [224] |
| Thylamys elegans
(Elegant fat-tailed mouse opossum) |
NC_005825.1 | 15452 bp | Complete Genome | [225] |
| Tlacuatzin canescens
(Greyish mouse opossum) |
NC_029381.1 | 16460 bp | Complete Genome | [226] |
Australidelphia
Order Microbiotheria
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Microbiotheriidae | Dromiciops gliroides
(Monito del monte) |
NC_005826.1 | 15350 bp | Complete Genome | [227] |
Order Diprotodontia
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Phascolarctidae | Phascolarctos cinereus
(Koala) |
NC_008133.1
(RefSeq) |
16357 bp | Complete Genome | [228] |
| Vombatidae | Vombatus ursinus
(Common wombat) |
NC_003322.1
(RefSeq) |
16996 bp | Complete Genome | [229] |
| Phalangeridae | Phalanger vestitus
(Stein's cuscus) |
NC_008137.1
(RefSeq) |
15318 bp | Complete Genome | [230] |
| Trichosurus vulpecula
(Common brushtail possum) |
NC_003039.1
(RefSeq) |
17191 bp | Complete Genome | [231] | |
| Phalanger orientalis
(Northern common cuscus) |
NC_056259.1
(RefSeq) |
15860 bp | Complete Genome | [232] | |
| Trichosurus caninus
(Short-eared possum) |
NC_069653.1
(RefSeq) |
16385 bp | Complete Genome | [233] | |
| Acrobatidae | Distoechurus pennatus
(Feather-tailed possum) |
NC_008145.1
(RefSeq) |
16775 bp | Complete Genome | [234] |
| Tarsipedidae | Tarsipes rostratus
(Honey possum) |
NC_006518.1
(RefSeq) |
15744 bp | Complete Genome | [235] |
| Petauridae | Dactylopsila trivirgata
(Striped possum) |
NC_008134.1
(RefSeq) |
16058 bp | Complete Genome | [236] |
| Gymnobelideus leadbeateri
(Leadbeater's possum) |
NC_053898.1
(RefSeq) |
16812 bp | Complete Genome | [237] | |
| Petaurus breviceps
(Sugar glider) |
NC_008135.1
(RefSeq) |
16103 bp | Complete Genome | [238] | |
| Pseudocheiridae | Pseudocheirus peregrinus
(Common ringtail possum) |
NC_006519.1
(RefSeq) |
16022 bp | Complete Genome | [239] |
| Potoroidae | † Caloprymnus campestris
(Desert rat-kangaroo) |
MT663337.1
(Genebank) |
16866 bp | Complete Genome | [240][241] |
| Potorous tridactylus
(Long-nosed potoroo) |
NC_006524.1
(RefSeq) |
16922 bp | Complete Genome | [242] | |
| Macropodidae | Lagostrophus fasciatus
(Banded hare-wallaby) |
NC_008447.1
(RefSeq) |
16866 bp | Complete Genome | [243] |
| Lagorchestes hirsutus
(Rufous hare-wallaby) |
NC_008136.1
(RefSeq) |
16889 bp | Complete Genome | [244] | |
| Macropus fuliginosus
(Western grey kangaroo) |
NC_039717.1
(RefSeq) |
16881 bp | Complete Genome | [245] | |
| Macropus giganteus
(Eastern grey kangaroo) |
NC_027424.1
(RefSeq) |
16887 bp | Complete Genome | [246] | |
| Osphranter robustus
(Common wallaroo) |
NC_001794.1
(RefSeq) |
16896 bp | Complete Genome | [247] | |
| † Protemnodon anak
(Giant kangaroo) |
MK190712.1
(Genebank) |
16447 bp | Partial Genome | [248][249] | |
| † Simosthenurus occidentalis
(Short-faced kangaroo) |
MK190713.1
(Genebank) |
16395 bp | Partial Genome | [250][249] |
Family Notoryctidae (Marsupial moles)
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Notoryctes typhlops
(Itjari-itjari) |
NC_006522.1 | 15923 bp | Complete Genome | [251] |
Order Dasyuromorphia
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Dasyuridae | Antechinus arktos | NC_050988.1 | 17334 bp | Complete Genome | [252] |
| Antechinus flavipes
(Yellow-footed antechinus) |
NC_056379.1 | 17381 bp | Complete Genome | [253] | |
| Dasycercus cristicauda
(Crest-tailed mulgara) |
NC_057634.1 | 17085 bp | Complete Genome | [254] | |
| Dasyurus hallucatus
(Northern quoll) |
NC_007630.1 | 17159 bp | Complete Genome | [255] | |
| Murexia melanurus
(Black-tailed dasyure) |
NC_045217.1 | 17736 bp | Complete Genome | [256] | |
| Phascogale tapoatafa
(Brush-tailed phascogale) |
NC_006523.1 | 17405 bp | Complete Genome | [257] | |
| Phascolosorex doriae
(Red-bellied marsupial shrew) |
NC_061372.1 | 17507 bp | Complete Genome | [258] | |
| Sarcophilus harrisii
(Tasmanian devil) |
NC_018788.1 | 17117 bp | Complete Genome | [259] | |
| Sminthopsis crassicaudata
(Fat-tailed dunnart) |
NC_007631.1 | 17363 bp | Complete Genome | [260] | |
| Sminthopsis douglasi
(Julia Creek dunnart) |
NC_006517.1 | 16538 bp | Complete Genome | [261] | |
| Myrmecobiidae | Myrmecobius fasciatus
(Numbat) |
NC_011949.1 | 16813 bp | Complete Genome | [262] |
| Thylacinidae | † Thylacinus cynocephalus (Thylacine) | NC_011944.1 | 17411 bp | Complete Genome | [263][264] |
Order Peramelemorphia
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Peramelidae
(Bandicoots) |
Echymipera rufescens
(Long-nosed spiny bandicoot) |
NC_007632.1 | 16642 bp | Complete Genome | [265] |
| Isoodon macrourus
(Northern brown bandicoot) |
NC_002746.1 | 16852 bp | Complete Genome | [266] | |
| Thylacomyidae
(Bilbies) |
Macrotis lagotis
(Greater bilby) |
NC_006520.1 | 15289 bp | Complete Genome | [267] |
Placentals
Xenarthra
Order Cingulata
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=948951 (20)
- Partial Genomes (2)
- https://www.ncbi.nlm.nih.gov/nuccore/?term=Doedicurus
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Pilosa
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=948950 (16)
- Complete Genome
- https://www.ncbi.nlm.nih.gov/nuccore/?term=Megatherium
- Complete genome
- https://www.ncbi.nlm.nih.gov/nuccore/?term=Mylodon
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Afrotheria
Order Hyracoidea (Hyraxes)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Procaviidae | Procavia capensis
(Rock hyrax) |
NC_004919.1 | 16743 bp | Complete Genome | [268] |
| Dendrohyrax dorsalis
(Western tree hyrax) |
NC_010301.1 | 16590 bp | Complete Genome | [269] |
Order Proboscidea
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Elephantidae
(Elephants) |
Loxodonta africana
(African savanna elephant) |
NC_000934.1 | 16866 bp | Complete Genome | [270] |
| Loxodonta cyclotis
(African forest elephant) |
NC_020759.1 | 16109 bp | Complete Genome | [271] | |
| † Elephas antiquus
(Straight-tusked elephant) |
NC_035230.1 | 16105 bp | Complete Genome | [272] | |
| Elephas maximus
(Asian elephant) |
NC_005129.2 | 16902 bp | Complete Genome | [273] | |
| † Mammuthus columbi
(Columbian mammoth) |
NC_015529.1 | 16459 bp | Complete Genome | [274] | |
| † Mammuthus primigenius
(Wooly mammoth) |
NC_007596.2 | 16770 bp | Complete Genome | [275][276] | |
| Mammutidae | † Mammut americanum
(American mastodon) |
NC_035800.1 | 16467 bp | Complete Genome | [277][278] |
Order Sirenia (Sea cows)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Trichechidae | Trichechus manatus
(West Indian manatee) |
NC_010302.1 | 16882 bp | Complete Genome | [279] |
| Dugongidae | Dugong dugon
(Dugong) |
NC_003314.1 | 16850 bp | Complete Genome | [280] |
| † Hydrodamalis gigas
(Steller's sea cow) |
NC_040161.1 | 16872 bp | Complete Genome | [281][282] |
Euarchontoglires
Order Lagomorpha
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9975 (31)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Rodentia (Rodents)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9989 (393)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Scandentia (Treeshrews)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Tupaiidae | Dendrogale murina
(Northern smooth-tailed treeshrew) |
NC_072603.1 | 16850 bp | Complete Genome | [283] |
| Tupaia belangeri
(Northern treeshrew) |
NC_002521.1 | 16754 bp | Complete Genome | [284] | |
| Tupaia glis
(Common treeshrew) |
NC_068695.1 | 16756 bp | Complete Genome | [285] | |
| Tupaia minor
(Pygmy treeshrew) |
NC_050993.1 | 16187 bp | Complete Genome | [286] | |
| Tupaia montana
(Mountain treeshrew) |
NC_054191.1 | 16183 bp | Complete Genome | [287] | |
| Tupaia nicobarica
(Nicobar treeshrew) |
NC_065160.1 | 17164 bp | Complete Genome | [288] | |
| Tupaia tana
(Large treeshrew) |
NC_050992.1 | 16186 bp | Complete Genome | [289] | |
| Tupaia splendidula
(Ruddy treeshrew) |
NC_050994.1 | 16189 bp | Complete Genome | [290] |
Order Dermoptera (Colugos)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Cynocephalidae | Galeopterus variegatus
(Malayan colugo) |
NC_004031.1 | 16748 bp | Complete Genome | [291] |
Order Primates
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9443 (290)
† Xenothrix mcgregori (Jamacian monkey)
- https://www.ncbi.nlm.nih.gov/nuccore/MK073942.1 partial? (conflicting)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Hominidae | † Homo longi (Denisovan) | NC_013993.1 | 16570 bp | Complete Genome | [294][295] |
| † Homo neandertalensis (Neanderthal) | NC_011137.1 | 16565 bp | Complete Genome | [296][297] |
Laurasiatheria
Order Eulipotyphla
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9362 (77)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Chiroptera (Bats)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9397 (185)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Pholidota (Pangolins)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Manidae | Manis crassicaudata
(Indian pangolin) |
NC_036433.1 | 16576 bp | Complete Genome | [298] |
| Manis culionensis
(Philippine pangolin) |
NC_036434.1 | 16577 bp | Complete Genome | [299] | |
| Smutsia gigantea
(Giant pangolin) |
NC_036064.1 | 16540 bp | Complete Genome | [300] | |
| Manis javanica
(Sunda pangolin) |
NC_026781.1 | 16576 bp | Complete Genome | [301] | |
| Manis mysteria
(Cryptic pangolin) |
NC_083998.1 | 17977 bp | Complete Genome | [302] | |
| Manis pentadactyla
(Chinese pangolin) |
NC_016008.1 | 16578 bp | Complete Genome | [303] | |
| Phataginus tetradactyla
(Long-tailed pangolin) |
NC_004027.1 | 16571 bp | Complete Genome | [304] | |
| Phataginus tricuspis
(White-bellied pangolin) |
NC_026780.1 | 16570 bp | Complete Genome | [305] | |
| Smutsia temminckii
(Ground pangolin) |
NC_025769.1 | 16559 bp | Complete Genome | [306] |
Order Carnivora
Not sure which of these have partial/complete conflicts and which don't. I put them in a list awhile ago so yeah, that's why
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=33554 (198)
† Ursus spelaeus (Cave bear)[307]
† Arctodus simus (American giant short faced bear)[308]
† Ursus deningeri (Deninger's bear)[309]
https://www.cell.com/current-biology/fulltext/S0960-9822(21)00138-X † Ursus kudarensis
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0149341 † Lutra nippon (Japanese river otter)
https://openquaternary.com/articles/oq.24 † Panthera spelaea (Cave lion)
† Smilodon populator (Saber-toothed tiger)
- Partial Genome
- https://www.ncbi.nlm.nih.gov/nuccore/MF871700.1
† Homotherium latidens (Scimitar-toothed cat)
- Partial Genome
- https://www.ncbi.nlm.nih.gov/nuccore/MF871703.1
† Panthera atrox (American lion)
- Complete Genome
- https://www.ncbi.nlm.nih.gov/nuccore/?term=Panthera+atrox
† Aenocyon dirus (Dire wolf)
- Complete Genome
- https://www.nature.com/articles/s41586-020-03082-x
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Artiodactyla (Even-toed ungulates)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=91561 (306)
https://academic.oup.com/zoolinnean/article/182/1/225/4036228 † Hippotragus leucophaeus (Bluebuck)
† Bison schoetensacki (Pleistocene woodland bison)[310]
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128267 † Bison priscus (Steppe bison)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Perissodactyla (Odd-toed ungulates)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=9787 (22)
† Equus mosbachensis (Middle Pleistocene wild horse)[311]
- https://www.ncbi.nlm.nih.gov/nuccore/PX123153.1 partial
- https://www.ncbi.nlm.nih.gov/nuccore/PX123152.1 partial
- https://www.ncbi.nlm.nih.gov/nuccore multiple partial
† Coelodonta antiquitatis (Woolly rhinoceros)[313]
† Haringtonhippus francisci (Stilt-legged horse)
- Bunch of partial genomes
- https://www.ncbi.nlm.nih.gov/nuccore/?term=Haringtonhippus
† Stephanorhinus kirchbergensis (Merck's rhinoceros)
- partial genomes (2-3)
- https://www.ncbi.nlm.nih.gov/nuccore/?term=Stephanorhinus
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Litopterna (Clade of South American Ungulates)
| Family | Species | Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Macraucheniidae | † Macrauchenia patachonica | KY611394.1 (Genebank) | 16781 bp | Partial Genome | [314][315] |
Echinodermata
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=7586 (142)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Hemichordata
Enteropneusta (Acorn worms)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Harrimaniidae | Saccoglossus kowalevskii | NC_007438.1 | 17037 bp | Complete Genome | [316] |
| Stereobalanus canadensis | NC_040107.1 | 17366 bp | Complete Genome | [317] | |
| Ptychoderidae | Balanoglossus carnosus | NC_001887.1 | 15708 bp | Complete Genome | [318] |
| Balanoglossus clavigerus | NC_013877.1 | 15710 bp | Complete Genome | [319] | |
| Glossobalanus marginatus | NC_040109.1 | 16827 bp | Complete Genome | [320] | |
| Spengelidae | Schizocardium brasiliense | NC_040108.1 | 15416 bp | Complete Genome | [321] |
Priapulida (Penis worms)
Order Priapulimorpha
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Priapulidae | Priapulus caudatus | NC_008557.1 | 14919 bp | Complete Genome | [322] |
Genus Halicryptus
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Halicryptus spinulosus | NC_020030.1 | 14732 bp | Complete Genome | [323] |
Nematodes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6231 (215)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Nematomorpha (Horsehair worms)
Order Gordioidea
Onychophora (Velvet worms)
Family Peripatidae
Due to insights from genetic analysis, many species in this family need a new genera name to prevent a polyphyletic family tree. Genera included are: Peripatus, Epiperipatus, Macroperipatus, and a few species of Oroperipatus.
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Neopatida | "Epiperipatus" biolleyi | NC_009082.1 | 14411 bp | Complete Genome | [326] |
| Oroperipatus? sp. DVL-2011 | NC_015890.1 | 14493 bp | Complete Genome | [327] |
Family Peripatopsidae
| Subfamily | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Basal South African-South American clade | Metaperipatus inae | NC_010961.1 | 15347 bp | Complete Genome | [328] |
| Opisthopatus cinctipes | NC_014273.1 | 13673 bp | Complete Genome | [329] |
Tardigrades
Eutardigrada
Order Parachela
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Hypsibiidae | Hypsibius dujardini | NC_014848.1 | 15169 bp | Complete Genome | [330] |
| Ramazzottius varieornatus | NC_031407.1 | 14428 bp | Complete Genome | [331] | |
| Thulinius sp. DVL-2010 | NC_015829.1 | 15047 bp | Complete Genome | [332] |
Arthropods
Chelicerata
Pycnogonida (Sea spiders)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=57294 (18)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Parasitiformes
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6934 (210)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Acariformes (True mites)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6946 (52)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Solifugae (Solifuges)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=41356 (2)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Opiliones (Harvestmen)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Phalangiidae | Oligolophus tienmushanensis | NC_029887.1 | 16798 bp | Complete Genome | [333] |
| Opilio parietinus | NC_014700.1 | 15400 bp | Complete Genome | [334] | |
| Phalangium opilio
(Common harvestman) |
NC_010766.1 | 14968 bp | Complete Genome | [335] |
Order Xiphosura (Horseshoe crabs)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Limulidae | Carcinoscorpius rotundicauda
(Mangrove horseshoe crab) |
NC_019623.1 | 15033 bp | Complete Genome | [336] |
| Limulus Polyphemus
(Atlantic horseshoe crab) |
NC_003057.1 | 14985 bp | Complete Genome | [337] | |
| Tachypleus tridentatus
(Tri-spine horseshoe crab) |
NC_012574.1 | 15008 bp | Complete Genome | [338] | |
| Tachypleus gigas
(Indo-Pacific horseshoe crab) |
NC_052701.1 | 14956 bp | Complete Genome | [339] |
Order Pseudoscorpiones (Pseudoscorpions)
Order Scorpiones (Scorpions)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6855 (11)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Order Araneae (Spiders)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6893 (64)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Myriapoda
Chilopoda (Centipedes)
Order Scutigeromorpha (House centipedes)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Scutigeridae | Scutigera coleoptrata
(House centipede) |
NC_005870.1 | 14922 bp | Complete Genome | [341] |
| Thereuonema tuberculata | NC_070164.1 | 14902 bp | Complete Genome | [342] | |
| Thereuopoda clunifera | NC_069983.1 | 14898 bp | Complete Genome | [343] |
Order Lithobiomorpha (Stone centipedes)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Lithobiidae | Lithobius forficatus
(Garden centipede) |
NC_002629.1 | 15695 bp | Complete Genome | [344] |
| Henicopidae | Cermatobius longicornis | NC_021403.1 | 16833 bp | Complete Genome | [345] |
Order Geophilomorpha (Soil centipedes)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Mecistocephalidae | Mecistocephalus marmoratus | NC_043772.1 | 15279 bp | Complete Genome | [346] |
| Linotaeniidae | Strigamia maritima | NC_026557.1 | 14983 bp | Complete Genome | [347] |
Diplopoda (Millipedes)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=7553 (25)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Pauropoda
Order Hexamerocerata
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Pauropodidae | Pauropus longiramus | NC_016676.1 | 14487 bp | Complete Genome | [348] |
Symphyla
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Scutigerellidae | Scutigerella hauserae | NC_008453.1 | 14637 bp | Complete Genome | [349] |
| Scolopendrellidae | Symphylella sp. YG-2006 | NC_011572.1 | 14667 bp | Complete Genome | [350] |
Pancrustacea
Oligostraca
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=2172819 (10)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Multicrustacea
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=2172821 (626)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Allotriocarida (Excluding Hexapods)
Branchiopoda
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6658 (37)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Hexapoda
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6960 (5,001)
† Glaucopsyche xerces (Xerces blue butterfly)[351]
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
Mollusks
Polyplacophora (Chitons)
Order Lepidopleurida
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Nierstraszellidae | Nierstraszella lineata | NC_047421.1 | 15765 bp | Complete Genome | [352] |
| Leptochitonidae | Leptochiton nexus | NC_047422.1 | 15488 bp | Complete Genome | [353] |
| Hanleyella oldroydi | NC_047423.1 | 15692 bp | Complete Genome | [354] |
Order Chitonida
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Plaxiphora tricolor | NC_085812.1 | 14909 bp | Complete Genome | [355] | |
| Acanthochitonidae | Acanthochitona avicula | NC_047426.1 | 15203 bp | Complete Genome | [356] |
| Acanthochitona defilippii | NC_087903.1 | 14999 bp | Complete Genome | [357] | |
| Acanthochitona mahensis | NC_082305.1 | 15013 bp | Complete Genome | [358] | |
| Cryptochiton stelleri
(Gumboot chiton) |
NC_026850.1 | 15082 bp | Complete Genome | [359] | |
| Lepidochitonidae | Cyanoplax caverna | NC_026848.1 | 15141 bp | Complete Genome | [360] |
| Nuttallina californica
(California spiny chiton) |
NC_026849.1 | 15604 bp | Complete Genome | [361] | |
| Mopaliidae | Dendrochiton gothicus | NC_047424.1 | 15288 bp | Complete Genome | [362] |
| Mopalia retifera | NC_068065.1 | 14984 bp | Complete Genome | [363] | |
| Katharina tunicata
(Kasuqix) |
NC_001636.1 | 15532 bp | Complete Genome | [364] | |
| Chitonidae | Acanthopleura loochooana | NC_068064.1 | 15366 bp | Complete Genome | [365] |
| Acanthopleura vaillantii | NC_082877.1 | 15271 bp | Complete Genome | [366] | |
| Chiton albolineatus | NC_047425.1 | 14936 bp | Complete Genome | [367] | |
| Liolophura japonica | NC_072326.1 | 15209 bp | Complete Genome | [368] | |
| Sypharochiton pelliserpentis
(Papatua) |
NC_024174.1 | 15048 bp | Complete Genome | [369] | |
| Sypharochiton sinclairi | NC_024173.1 | 15028 bp | Complete Genome | [370] | |
| Ischnochitonidae | Lepidozona coreanica | NC_046935.1 | 16572 bp | Complete Genome | [371] |
Caudofoveata
This group of animals is experiencing some name and classification changes due to recent molecular phylogenetic analysis. While the referenced sequences are accurate, the named attached to them may change.
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Chaetoderma nitidulum | NC_013846.1 | 21008 bp | Complete Genome | [372] |
| "Falcidens" halanychi | NC_037877.1 | 14508 bp | Complete Genome | [373] |
| Falcidens (Chastofalcidens) acutargatus | NC_037876.1 | 14209 bp | Complete Genome | [374] |
| Scutopus ventrolineatus | NC_025284.1 | 14662 bp | Complete Genome | [375] |
| "Scutopus" robustus | NC_038081.1 | 14515 bp | Complete Genome | [376] |
Monoplacophora
Order Tryblidiida
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Laevipilinidae | Laevipilina antarctica | NC_033380.1 | 18642 bo | Complete Genome | [377] |
| Neopilinidae | Vema ewingi | NC_033379.1 | 17910 bp | Complete Genome | [378] |
Cephalopods
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6605 (108)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Complete Genome |
Gastropods
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6448 (436)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Complete Genome |
Bivalves
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6544 (295)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Complete Genome |
Scaphopoda (Tusk shells)
Order Dentaliida
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Dentaliidae | Graptacme eborea | NC_006162.1 | 14492 bp | Complete Genome | [379] |
| Gadilidae | Siphonodentalium lobatum | NC_005840.1 | 13932 bp | Complete Genome | [380] |
Nemertea (Ribbon worms)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6217 (20)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Complete Genome |
Annelida (Segmented worms)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6340 (171)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Complete Genome |
Brachiopods
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=7568 (6)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Complete Genome |
Phoronida
| Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|
| Phoronopsis harmeri | NC_018761.1 | 15495 bp | Complete Genome | [381] |
Bryozoa
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=10205 (9)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Complete Genome |
Gastrotricha (Hairybacks)
Order Chaetonotida
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Chaetonotidae | Lepidodermella squamata | NC_026985.1 | 14558 bp | Complete Genome | [382] |
Gnathifera
Rotifers
Bdelloidea
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Philodinidae | Rotaria rotatoria | NC_013568.1 | 15319 bp | Complete Genome | [383] |
Monogononta
Order Ploima
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Brachionidae | Brachionus plicatilis | NC_010472.1 | 11153 bp | Part 1 of a Complete Genome | [384] |
| NC_010484.1 | 12672 bp | Part 2 of a Complete Genome | [385] |
Chaetognatha (Arrow worms)
Order Aphragmophora
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Sagittidae | Decipisagitta decipiens | NC_013811.1 | 11121 bp | Complete Genome | [386] |
| Flaccisagitta enflata | NC_013814.1 | 12631 bp | Complete Genome | [387] | |
| Zonosagitta nagae | NC_013810.1 | 11459 bp | Complete Genome | [388] |
Order Phragmophora
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Spadellidae | Paraspadella gotoi | NC_006083.1 | 11423 bp | Complete Genome | [389] |
| Spadella cephaloptera | NC_006386.1 | 11905 bp | Complete Genome | [390] |
Platyhelminthes (Flatworms)
https://www.ncbi.nlm.nih.gov/datasets/organelle/?taxon=6157 (190)
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Complete Genome |
Mesozoa
Orthonectida
| Family | Species | RefSeq Assembly Name | Genome Size | Assembly Status | Genome Reference |
|---|---|---|---|---|---|
| Rhopaluridae | Intoshia linei | NC_060553.1 | 15217 bp | Complete Genome | [391] |