User:Snoteleks/bibliography

From Wikipedia, the free encyclopedia

My list of bibliographical references, mainly on protistology, for easier access of references when editing and doing other works.

About me Cladogram collection Bibliography

A

Adl, Sina M.; Simpson, Alastair G. B.; Farmer, Mark A.; Andersen, Robert A.; Anderson, O. Roger; et al. (19 October 2005). "The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists". The Journal of Eukaryotic Microbiology. 52 (2): 399–451. doi:10.1111/j.1550-7408.2005.00053.x. PMID 16248873.

Adl, Sina M.; Leander, Brian S.; Simpson, Alastair G. B.; Archibald, John M.; Anderson, O. Roger.; et al. (1 August 2007). "Diversity, Nomenclature, and Taxonomy of Protists" (PDF). Systematic Biology. 56 (4): 684–689. doi:10.1080/10635150701494127. ISSN 1076-836X. PMID 17661235. Retrieved 15 July 2025.

Adl, Sina M.; Simpson, Alastair G. B.; Lane, Christopher E.; Lukeš, Julius; Bass, David; et al. (28 September 2012). "The Revised Classification of Eukaryotes". The Journal of Eukaryotic Microbiology. 59 (2): 429–514. doi:10.1111/j.1550-7408.2012.00644.x. PMC 3483872. PMID 23020233.

Adl, Sina M.; Bass, David; Lane, Christopher E.; Lukeš, Julius; Schoch, Conrad L.; et al. (26 September 2018). "Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes". The Journal of Eukaryotic Microbiology. 66 (1): 4–119. doi:10.1111/JEU.12691. PMC 6492006. PMID 30257078.

Aléxéieff, A. (27 February 1912). "Sur les charactères cytologiques et la systématique des amibes du groupe limax (Nægleria nov. gen. et Hartmannia nov. gen.) et des amibes parasites des vertébrés (Proctamœba nov. gen.)" [On the cytological characters and the systematics of the amoebae of the limax group (Nægleria nov. gen. and Hartmannia nov. gen.) and the parasitic amoebae of vertebrates (Proctamœba nov. gen.)]. Bulletin de la Société Zoologique de France (in French). 37: 55–74. doi:10.5962/bhl.part.7429. BHL page 3047387.

Aléxéieff, A. (23 April 1912). "Quelques remarques complémentaires sur la systématique des amibes du groupe limax" [Some additional remarks on the systematics of the amoebae of the limax group]. Bulletin de la Société Zoologique de France (in French). 37: 149–157. BHL page 3047481.

Amaral, Raquel; Fawley, Karen P.; Němcová, Yvonne; Ševčíková, Tereza; Lukešová, Alena; et al. (2020). "Toward Modern Classification of Eustigmatophytes, Including the Description of Neomonodaceae Fam. Nov. and Three New Genera". Journal of Phycology. 56 (3): 630–648. Bibcode:2020JPcgy..56..630A. doi:10.1111/jpy.12980. PMC 7987219. PMID 32068883.

Anderson, O. Roger (1983). Radiolaria. New York: Springer-Verlag. ISBN 0-387-90832-3. OCLC 1349292638.

Angell, Robert W. (1975). "Structure of Trichosphaerium micrum sp. n.". Journal of Protozoology. 22 (1): 18–22. doi:10.1111/j.1550-7408.1975.tb00937.x.

Angell, Robert W. (1976). "Observations on Trichosphaerium platyxyrum sp. n.". Journal of Protozoology. 23 (3): 357–364. doi:10.1111/j.1550-7408.1976.tb03788.x.

Archer, William (1871). "On some freshwater rhizopoda, new or little-known. Fasciculus II. On Amphizonella vestita (sp. nov.), Acanthocystis spinifera (Greeff) and Plagiophrys sphærica (Clap, et Lachm)". Journal of Cell Science. s2-11 (42): 107–151. doi:10.1242/jcs.s2-11.42.107.

Arenillas, Ignacio; Arz, José Antonio; Gilabert, Vicente (27 June 2022). "An updated suprageneric classification of planktic foraminifera after growing evidence of multiple benthic-planktic transitions". Spanish Journal of Palaeontology. 37 (1): 1–34. doi:10.7203/sjp.22189. ISSN 2660-9568.

Atlan, Donièle; Coupat-Goutaland, Bénédicte; Risler, Arnaud; Reyrolle, Monique; Souchon, Maud; et al. (2012). "Micriamoeba tesseris nov. gen. nov. sp.: A New Taxon of Free-living Small-sized Amoebae Non-permissive to Virulent Legionellae". Protist. 163 (6): 888–902. doi:10.1016/j.protis.2012.04.006. PMID 22677099.

Awerintzew, S. (1906). "Die Süßwasser Rhizopoden" [The freshwater rhizopods]. Trudy Imperatorskago S.-Peterburgskago obshchestva estestvoispytateleĭ (in German). 36: 1–351.

Aydin, Esra Elif; Lee, Won Je (2022). "Free-living Heterotrophic Flagellates (Protista) from Two Hypersaline Lakes in Turkey". Acta Protozoologica. 61: 85–98. doi:10.4467/16890027AP.22.008.17111.

B

Barcytė, Dovilė; Eikrem, Wenche; Engesmo, Anette; Seoane, Sergio; Wohlmann, Jens; et al. (2 March 2021). "Olisthodiscus represents a new class of Ochrophyta". Journal of Phycology. 57 (4): 1094–1118. Bibcode:2021JPcgy..57.1094B. doi:10.1111/jpy.13155. hdl:10852/86515. PMID 33655496.

Barkhouse, Kate M.; Eglit, Yana; Weston, Elizabeth J.; Jenkins, Adriana B. A.; Simpson, Alastair G. B. (2025). "Cultivation of Ancyromonas melba, and Reclassification as the Type Species of Divimonas gen. nov., a Phylogenetically Important Ancyromonad Lineage". Journal of Eukaryotic Microbiology. 72 (2): e70005. doi:10.1111/jeu.70005. PMC 11891473. PMID 40059502.{{cite journal}}: CS1 maint: article number as page number (link)

Bartoš, E. (1940). "Studien über die moosbewohnenden Rhizopoden der Karpaten" [Studies on the moss-dwelling rhizopods of the Carpathians]. Archiv für Protistenkunde (in German). 94: 93–160.

Bartoš, E. (1963). "Beiträge zur Kenntnis der Moosmikrofauna" [Contributions to the knowledge of moss microfauna]. Věstník Československé Společnosti Zoologické (in German). 27: 1–3.

Bass, David; Chao, Ema E.-Y.; Nikolaev, Sergey; Yabuki, Akinori; Ishida, Ken-Ichiro; et al. (7 October 2008). "Phylogeny of novel naked filose and reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised". Protist. 160: 75–109. doi:10.1016/j.protis.2008.07.002. PMID 18952499.

Baumgartner, Manuela; Yapi, Ahoua; Gröbner-Ferreira, Regina; Stetter, Karl O. (2003). "Cultivation and properties of Echinamoeba thermarum n. sp., an extremely thermophilic amoeba thriving in hot springs". Extremophiles. 7 (4): 267–274. doi:10.1007/s00792-003-0319-6. PMID 12910386.

Beakes, Gordon W.; Honda, Daiske; Thines, Marco (2014). "Systematics of the Straminipila: Labyrinthulomycota, Hyphochytriomycota, and Oomycota". In McLaughlin, David J.; Spatafora, Joseph W. (eds.). Systematics and Evolution. Part A. The Mycota: A Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research. Vol. 7 (2nd ed.). Berlin, Heidelberg: Springer. doi:10.1007/978-3-642-55318-9_3.

Bernard, Catherine; Simpson, Alastair G. B.; Patterson, David J. (2000). "Some free-living flagellates (protista) from anoxic habitats". Ophelia. 52 (2): 113–142. doi:10.1080/00785236.1999.10409422. ISSN 0078-5326.

Berney, Cédric; Geisen, Stefan; Van Wichelen, Jeroen; Nitsche, Frank; Vanormelingen, Pieter; et al. (20 April 2015). "Expansion of the 'Reticulosphere': Diversity of Novel Branching and Network-forming Amoebae Helps to Define Variosea (Amoebozoa)". Protist. 166 (2): 271–295. doi:10.1016/j.protis.2015.04.001. PMID 25965302.

Betts, Holly C.; Puttick, Mark N.; Clark, James W.; Williams, Tom A.; Donoghue, Philip C. J.; Pisani, Davide (20 August 2018). "Integrated genomic and fossil evidence illuminates life's early evolution and eukaryote origin". Nature Ecology & Evolution. 2 (10): 1556–1562. doi:10.1038/s41559-018-0644-x. ISSN 2397-334X. PMC 6152910. PMID 30127539.

Beyens, Louis; Chardez, Didier (1997). "New testate amoebae taxa from the polar regions". Acta Protozoologica. 36 (2): 137–142.

Blandenier, Quentin; Seppey, Christophe V. W.; Singer, David; Vlimant, Michèle; Simon, Anaële; et al. (20 August 2016). "Mycamoeba gemmipara nov. gen., nov. sp., the First Cultured Member of the Environmental Dermamoebidae Clade LKM74 and its Unusual Life Cycle" (PDF). Journal of Eukaryotic Microbiology. 64 (2): 257–265. doi:10.1111/jeu.12357. PMID 27543384. S2CID 4665573.

Bonnet, L.; Thomas, R. (1955). "Étude sur les thécamoebiens du sol (I)" [Study of the soil thecamoebae (I)]. Bulletin de la Société d'Histoire naturelle de Toulouse (in French). 90: 411–428.

Boscaro, Vittorio; James, Erick R.; Fiorito, Rebecca; del Campo, Javier; Scheffrahn, Rudolf H.; Keeling, Patrick J. (2024). "Updated classification of the phylum Parabasalia". Journal of Eukaryotic Microbiology. 71 (4): e13035. doi:10.1111/jeu.13035. ISSN 1066-5234.{{cite journal}}: CS1 maint: article number as page number (link)

Bourrelly, Pierre (1957). Recherches sur les Chrysophycées: Morphologie, Phylogénie, Systématique [Research on the Chrysophyceae: Morphology, Phylogeny, Systematics]. Revue algologique (in French). Paris: Muséum National d'Histoire Naturelle. pp. 131–160. Retrieved 19 July 2025.

Bovee, Eugene C. (1965). "An emendation of the ameba genus Flabellula and a description of Vannella gen. nov". Transactions of the American Microscopical Society. 84 (2): 217–227. doi:10.2307/3224288. JSTOR 3224288.

Bovee, Eugene C. (1970). "The lobose amebas I. A key to the suborder Conopodina Bovee and Jahn, 1966 and descriptions of thirteen new or little known Mayorella species". Archiv für Protistenkunde. 112: 178–227.

Bovee, Eugene C. (1972). "The lobose amoebas IV. A key to the order Granulopodida Bovee & Jahn, 1966, and descriptions of some new and little-known species in this order". Archiv für Protistenkunde. 114: 371–403.

Bringloe, Trevor T.; Starko, Samuel; Wade, Rachael M.; Vieira, Christophe; Kawai, Hiroshi; et al. (27 Jul 2020). "Phylogeny and Evolution of the Brown Algae" (PDF). Critical Reviews in Plant Sciences. 39 (4): 281–321. Bibcode:2020CRvPS..39..281B. doi:10.1080/07352689.2020.1787679. Retrieved 22 August 2025.

Brown, James Meikle (1912). "Further contributions to our knowledge of the Rhizopoda and Heliozoa of Scotland". The Scottish Naturalist. 21 (5): 108–114. BHL page 6409737.

Brown, Matthew W.; Silberman, Jeffrey D.; Spiegel, Frederick W. (26 November 2010). ""Slime Molds" among the Tubulinea (Amoebozoa): Molecular Systematics and Taxonomy of Copromyxa". Protist. 162 (2): 277–287. doi:10.1016/j.protis.2010.09.003. PMID 21112814.

Brown, Matthew W.; Sharpe, Susan C.; Silberman, Jeffrey D.; Heiss, Aaron A.; Lang, B. Franz; et al. (22 October 2013). "Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads". Proceedings of the Royal Society B: Biological Sciences. 280 (1769): 20131755. doi:10.1098/rspb.2013.1755. ISSN 0962-8452. PMC 3768317. PMID 23986111.{{cite journal}}: CS1 maint: article number as page number (link)

Burki, Fabien; Inagaki, Yuji; Bråte, Jon; Archibald, John M.; Keeling, Patrick J.; et al. (27 July 2009). "Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates". Genome Biology and Evolution. 1: 231–238. doi:10.1093/gbe/evp022. ISSN 1759-6653. PMC 2817417. PMID 20333193.

Burki, Fabien; Okamoto, Noriko; Pombert, Jean-François; Keeling, Patrick J. (7 June 2012). "The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins". Proceedings of the Royal Society B: Biological Sciences. 279 (1736): 2246–2254. doi:10.1098/rspb.2011.2301. ISSN 0962-8452. PMC 3321700. PMID 22298847.

Burki, Fabien; Kaplan, Maia; Tikhonenkov, Denis V.; Zlatogursky, Vasily; Minh, Bui Quang; et al. (27 January 2016). "Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista". Proceedings of the Royal Society B: Biological Sciences. 283 (1823) 20152802. doi:10.1098/rspb.2015.2802. ISSN 0962-8452. PMC 4795036. PMID 26817772.

Burki, Fabien; Roger, Andrew J.; Brown, Matthew W.; Simpson, Alastair G.B. (9 October 2019). "The New Tree of Eukaryotes". Trends in Ecology & Evolution. 35 (1): 43–55. Bibcode:2020TEcoE..35...43B. doi:10.1016/j.tree.2019.08.008. PMID 31606140. Retrieved 2025-06-05.

C

Cash, James; Hopkinson, John (1905). Rhizopoda, part I. The British freshwater Rhizopoda and Heliozoa. Vol. I. London: Printed for the Ray Society. pp. i–x, 1–150, plates I–XVI. doi:10.5962/bhl.title.927. LCCN 06007330. OCLC 6063003. BHL page 806439.

Cash, James; Hopkinson, John (1909). Rhizopoda, part II. The British freshwater Rhizopoda and Heliozoa. Vol. II. London: Printed for the Ray Society. pp. i–xviii, 1–166, plates XVII–XXXII. doi:10.5962/bhl.title.927. LCCN 06007330. OCLC 6063003. BHL page 869017.

Cann, J. P.; Page, F. C. (1979). "Nucleosphaerium tuckeri nov. gen. nov. sp. – a new freshwater filose amoeba without motile form in a new family Nucleariidae (Filosea: Aconchulinida) feeding by ingestion only". Archiv für Protistenkunde. 122 (3–4): 226–240. doi:10.1016/S0003-9365(79)80034-2.

Cann, John P. (August 1986). "The feeding behavior and structure of Nuclearia delicatula". Journal of Protozoology. 33 (3): 392–396. doi:10.1111/j.1550-7408.1986.tb05629.x.

Cavalier-Smith, T. (April 1978). "The evolutionary origin and phylogeny of microtubules, mitotic spindles and eukaryote flagella". Biosystems. 10 (1–2): 93–114. doi:10.1016/0303-2647(78)90033-3.

Cavalier-Smith, T. (1981). "The origin and early evolution of the eukaryotic cell". In Carlile, M.J.; Collins, J.F.; Moseley, B.E.B. (eds.). Molecular and cellular aspects of microbial evolution. Society for General Microbiology Symposium. Vol. 32. Cambridge University Press. pp. 33–84. ISBN 0-521-24108-1.

Cavalier-Smith, T. (1981). "Eukaryote kingdoms: seven or nine?" (PDF). BioSystems. 14 (3–4): 461–481. doi:10.1016/0303-2647(81)90050-2. PMID 7337818.

Cavalier-Smith, T. (May 1982). "The origins of plastids". Biological Journal of the Linnean Society. 17 (3): 289–306. doi:10.1111/j.1095-8312.1982.tb02023.x.

Cavalier-Smith, T. (1986). "The Kingdom Chromista: Origin and Systematics" (PDF). In Round, F.E.; Chapman, D.J. (eds.). Progress in Phycological Research. Vol. 4. Bristol: Biopress. pp. 309–347. ISBN 094873700X. OL 15332140M.

Cavalier-Smith, T. (1989). "The kingdom Chromista". In Green, J.C.; Leadbeater, B.S.C.; Diver, W.L. (eds.). The chromophyte algae: problems and perspectives. The Systematics Association Special Volume No. 38. Oxford: Clarendon Press. pp. 381–408.

Cavalier-Smith, T. (30 January 1992). "Cell diversification in heterotrophic flagellates". The Biology of Free-Living Heterotrophic Flagellates. Oxford: Oxford University Press. pp. 113–132. doi:10.1093/oso/9780198577478.003.0008. ISBN 978-0-19-857747-8.

Cavalier-Smith, Thomas (1993). "Kingdom Protozoa and its 18 phyla". Microbiological Reviews. 57 (4): 953–994. doi:10.1128/mr.57.4.953-994.1993. PMC 372943. PMID 8302218.

Cavalier-Smith, T.; Chao, E.E.; Allsopp, M.T.E.P. (April 1995). "Ribosomal RNA Evidence for Chloroplast Loss within Heterokonta: Pedinellid Relationships and a Revised Classification of Ochristan Algae". Archiv für Protistenkunde. 145 (3–4): 209–220. doi:10.1016/S0003-9365(11)80316-7.

Cavalier-Smith, Thomas; Paula Allsopp, M.T.E. (30 August 1996). "Corallochytrium, an enigmatic non-flagellate protozoan related to choanoflagellates". European Journal of Protistology. 32 (3): 306–310. doi:10.1016/S0932-4739(96)80053-8.

Cavalier-Smith, T.; Chao, E. E. (1996). "18S rRNA sequence of Heterosigma carterae (Raphidophyceae), and the phylogeny of heterokont algae (Ochrophyta)". Phycologia. 35 (6): 500–510. doi:10.2216/i0031-8884-35-6-500.1. ISSN 0031-8884.

Cavalier-Smith, Thomas (April 1997). "Amoeboflagellates and Mitochondrial Cristae in Eukaryote Evolution: Megasystematics of the New Protozoan Subkingdoms Eozoa and Neozoa". Archiv für Protistenkunde. 147 (3–4): 237–258. doi:10.1016/S0003-9365(97)80051-6.

Cavalier-Smith, Thomas (1998). "A revised six-kingdom system of life". Biological Reviews. 73 (3): 203–266. doi:10.1111/j.1469-185X.1998.tb00030.x. PMID 9809012.

Cavalier-Smith, Tom (1999). "Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree". Journal of Eukaryotic Microbiology. 46 (4): 347–366. doi:10.1111/j.1550-7408.1999.tb04614.x. PMID 18092388.

Cavalier-Smith, T (2000). "Flagellate megaevolution: the basis for eukaryote diversification". In Leadbeater, Barry S. C.; Green, J. C. (eds.). The flagellates: Unity, diversity and evolution. The Systematics Association Special Volume Series. Vol. 59. London: Taylor & Francis Limited. pp. 361–390. ISBN 0-203-79305-6.

Cavalier-Smith, T (1 March 2002). "The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa". International Journal of Systematic and Evolutionary Microbiology. 52 (2): 297–354. doi:10.1099/00207713-52-2-297. ISSN 1466-5026. PMID 11931142.

Cavalier-Smith, Thomas; Chao, Ema E. -Y. (April 2003). "Molecular Phylogeny of Centrohelid Heliozoa, a Novel Lineage of Bikont Eukaryotes That Arose by Ciliary Loss". Journal of Molecular Evolution. 56 (4): 387–396. doi:10.1007/s00239-002-2409-y. ISSN 0022-2844.

Cavalier-Smith, Thomas (1 November 2003). "The excavate protozoan phyla Metamonada Grassé emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): their evolutionary affinities and new higher taxa". International Journal of Systematic and Evolutionary Microbiology. 53 (6): 1741–1758. doi:10.1099/ijs.0.02548-0. PMID 14657102.

Cavalier-Smith, Thomas (2003). "Protist phylogeny and the high-level classification of Protozoa". European Journal of Protistology. 39 (4): 338–348. doi:10.1078/0932-4739-00002.

Cavalier-Smith, T. (17 May 2004). "Only six kingdoms of life" (PDF). Proceedings of the Royal Society B: Biological Sciences. 271 (1545): 1251–1262. doi:10.1098/rspb.2004.2705. PMC 1691724. PMID 15306349. Retrieved 14 June 2025.

Cavalier-Smith, Thomas (28 June 2004). "Chromalveolate Diversity and Cell Megaevolution: Interplay of Membranes, Genomes and Cytoskeleton". In Hirt, Robert P.; Horner, David S. (eds.). Organelles, Genomes and Eukaryote Phylogeny: An Evolutionary Synthesis in the Age of Genomics. CRC Press for the Systematics Association. pp. 86–126. ISBN 0-203-50893-9. LCCN 2003070023.

Cavalier-Smith, Thomas; Chao, Ema E. (6 September 2004). "Protalveolate phylogeny and systematics and the origins of Sporozoa and dinoflagellates (phylum Myzozoa nom. nov.)". European Journal of Protistology. 40 (3): 185–212. doi:10.1016/j.ejop.2004.01.002.

Cavalier-Smith, Thomas; Chao, Ema E-Y. (22 March 2006). "Phylogeny and Megasystematics of Phagotrophic Heterokonts (Kingdom Chromista)". Journal of Molecular Evolution. 62 (4): 388–420. doi:10.1007/s00239-004-0353-8. ISSN 0022-2844.

Cavalier-Smith, Thomas; von der Heyden, Sophie (September 2007). "Molecular phylogeny, scale evolution and taxonomy of centrohelid heliozoa". Molecular Phylogenetics and Evolution. 44 (3): 1186–1203. doi:10.1016/j.ympev.2007.04.019. PMID 17588778.

Cavalier-Smith, Thomas (23 June 2010). "Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree". Biology Letters. 6 (3): 342–345. doi:10.1098/rsbl.2009.0948. ISSN 1744-9561. PMC 2880060. PMID 20031978.

Cavalier-Smith, Thomas; Chao, Ema E. (July 2012). "Oxnerella micra sp. n. (Oxnerellidae fam. n.), a tiny naked centrohelid, and the diversity and evolution of Heliozoa". Protist. 163 (4): 574–601. doi:10.1016/j.protis.2011.12.005. PMID 22317961.

Cavalier-Smith, Thomas (May 2013). "Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa". European Journal of Protistology. 49 (2): 115–178. doi:10.1016/j.ejop.2012.06.001. PMID 23085100.

Cavalier-Smith, Thomas; Scoble, Josephine Margaret (August 2013). "Phylogeny of Heterokonta: Incisomonas marina, a uniciliate gliding opalozoan related to Solenicola (Nanomonadea), and evidence that Actinophryida evolved from raphidophytes". European Journal of Protistology. 49 (3): 328–353. doi:10.1016/j.ejop.2012.09.002. PMID 23219323.

Cavalier-Smith, Thomas (26 August 2013). "Symbiogenesis: Mechanisms, Evolutionary Consequences, and Systematic Implications". Annual Review of Ecology, Evolution, and Systematics. 44: 145–172. doi:10.1146/annurev-ecolsys-110411-160320.

Cavalier-Smith, Thomas; Chao, Ema E.; Lewis, Rhodri (31 July 2015). "Multiple origins of Heliozoa from flagellate ancestors: New cryptist subphylum Corbihelia, superclass Corbistoma, and monophyly of Haptista, Cryptista, Hacrobia and Chromista". Molecular Phylogenetics and Evolution. 93: 331–362. doi:10.1016/j.ympev.2015.07.004.

Cavalier-Smith, Thomas; Chao, Ema E.; Lewis, Rhodri (18 March 2016). "187-gene phylogeny of protozoan phylum Amoebozoa reveals a new class (Cutosea) of deep-branching, ultrastructurally unique, enveloped marine Lobosa and clarifies amoeba evolution". Molecular Phylogenetics and Evolution. 99: 275–296. Bibcode:2016MolPE..99..275C. doi:10.1016/J.YMPEV.2016.03.023. PMID 27001604.

Cavalier-Smith, Thomas; Chao, Ema E.; Vickerman, Keith (October 2016). "New phagotrophic euglenoid species (new genus Decastava; Scytomonas saepesedens; Entosiphon oblongum), Hsp90 introns, and putative euglenoid Hsp90 pre-mRNA insertional editing". European Journal of Protistology. 56: 147–170. doi:10.1016/j.ejop.2016.08.002. PMID 27718409.

Cavalier-Smith, Thomas (October 2016). "Higher classification and phylogeny of Euglenozoa". European Journal of Protistology. 56: 250–276. doi:10.1016/j.ejop.2016.09.003. PMID 27889663.

Cavalier-Smith, Thomas (5 September 2017). "Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences". Protoplasma. 255 (1): 297–357. doi:10.1007/s00709-017-1147-3. PMC 5756292. PMID 28875267.

Cavalier-Smith, Thomas; E. Chao, Ema; Lewis, Rhodri (27 April 2018). "Multigene phylogeny and cell evolution of chromist infrakingdom Rhizaria: contrasting cell organisation of sister phyla Cercozoa and Retaria". Protoplasma. 255 (5): 1517–1574. doi:10.1007/s00709-018-1241-1. PMC 6133090. PMID 29666938.

Cavalier-Smith, Thomas (23 December 2021). "Ciliary transition zone evolution and the root of the eukaryote tree: implications for opisthokont origin and classification of kingdoms Protozoa, Plantae, and Fungi". Protoplasma. 259 (3): 487–593. doi:10.1007/s00709-021-01665-7. PMC 9010356. PMID 34940909.

Certes, A. (1891). "Protozoaires". Mission scientifique du Cap Horn, 1882-1883. Vol. VI. Zoologie. Pt. 3 Priapulides, Bryozoaires, Échinodermes, Protozoaires. Paris: Gauthier-Villars. BHL page 34621930.

Chardez, D.; Beyens, L. (1988). "Centropyxis gasparella sp. nov. and Parmulina louisi sp. nov., new testate amoebae from the Canadian High Arctic (Devon Island, NWT)". Archiv für Protistenkunde. 136 (4): 337–344. doi:10.1016/S0003-9365(88)80014-9.

Cho, Anna; Tikhonenkov, Denis V.; Hehenberger, Elisabeth; Karnkowska, Anna; Mylnikov, Alexander P.; Keeling, Patrick J. (2022). "Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles" (PDF). Molecular Phylogenetics and Evolution. 171 (107468): 107468. doi:10.1016/j.ympev.2022.107468. ISSN 1055-7903. PMID 35358688. S2CID 247815732.{{cite journal}}: CS1 maint: article number as page number (link)

Cho, Anna; Tikhonenkov, Denis V.; Lax, Gordon; Prokina, Kristina I.; Keeling, Patrick J. (10 November 2023). "Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean". Molecular Phylogenetics and Evolution. 190 107964. doi:10.1016/j.ympev.2023.107964.

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Handbook of the protists (2017)

Chapter 1 — Simpson, Alastair G. B.; Slamovits, Claudio H.; Archibald, John M. (2017). "Protist Diversity and Eukaryote Phylogeny". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 1–22. doi:10.1007/978-3-319-28149-0_45. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 2 — Price, Dana C.; Steiner, Jürgen M.; Yoon, Hwan Su; Bhattacharya, Debashish; Löffelhardt, Wolfgang (2017). "Glaucophyta" (PDF). In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 23–87. doi:10.1007/978-3-319-28149-0_42. ISBN 978-3-319-28149-0. LCCN 2017945328. Retrieved 9 June 2025.
Chapter 3 — Yoon, Hwan Su; Nelson, Wendy; Lindstrom, Sandra C.; Boo, Sung Min; Pueschel, Curt; Qiu, Huan; Bhattacharya, Debashish (2017). "Rhodophyta". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 89–135. doi:10.1007/978-3-319-28149-0_33. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 4 — Hall, John D.; McCourt, Richard M. (2017). "Zygnematophyta". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 135–330. doi:10.1007/978-3-319-28149-0_33. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 8 — Kawai, Hiroshi; Henry, Eric C. (2017). "Phaeophyta" (PDF). In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 267–304. doi:10.1007/978-3-319-28149-0_31. ISBN 978-3-319-28149-0. LCCN 2017945328. Retrieved 9 June 2025.
Chapter 10 — Kristiansen, Jørgen; Škaloud, Pavel (2017). "Chrysophyta". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 331–366. doi:10.1007/978-3-319-28149-0_43. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 13 — Beakes, Gordon W.; Thines, Marco (2017). "Hyphochytriomycota and Oomycota". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 435–505. doi:10.1007/978-3-319-28149-0_26. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 15 — Kostka, Martin (2017). "Opalinata". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 543–565. doi:10.1007/978-3-319-28149-0_4. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 16 — Votýpka, Jan; Modrý, David; Oborník, Miroslav; Šlapeta, Jan; Lukeš, Julius (2017). "Apicomplexa". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 567–624. doi:10.1007/978-3-319-28149-0_20. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 18 — Lynn, Denis H. (2017). "Ciliophora". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 679–730. doi:10.1007/978-3-319-28149-0_23. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 20 — Keeling, Patrick J. (2017). "Chlorarachniophytes". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 1 (2nd ed.). Cham: Springer International Publishing. pp. 765–781. doi:10.1007/978-3-319-28149-0_34. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 24 — Hoef-Emden, Kerstin; Archibald, John M. (2017). "Cryptophyta (Cryptomonads)". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 2 (2nd ed.). Cham: Springer International Publishing. pp. 851–891. doi:10.1007/978-3-319-28149-0_35. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 25 — Eikrem, Wenche; Medlin, Linda K.; Henderiks, Jorijntje; Rokitta, Sebastian; Rost, Björn; et al. (2017). "Haptophyta" (PDF). In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 2 (2nd ed.). Cham: Springer International Publishing. pp. 893–953. doi:10.1007/978-3-319-28149-0_38. ISBN 978-3-319-28149-0. LCCN 2017945328. Retrieved 9 June 2025.
Chapter 26 — Gast, Rebecca J. (2017). "Centrohelida and Other Heliozoan-Like Protists" (PDF). In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 2 (2nd ed.). Cham: Springer International Publishing. pp. 955–971. doi:10.1007/978-3-319-28149-0_28. ISBN 978-3-319-28149-0. LCCN 2017945328. Retrieved 9 June 2025.
Chapter 27 — Simpson, Alastair G. B. (2017). "Jakobida". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 2 (2nd ed.). Cham: Springer International Publishing. pp. 973–1004. doi:10.1007/978-3-319-28149-0_6. ISBN 978-3-319-28147-6.
Chapter 28 — Pánek, Tomáš; Simpson, Alastair G. B.; Brown, Matthew W.; Dyer, Betsey Dexter (2017). "Heterolobosea". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 2 (2nd ed.). Cham: Springer International Publishing. pp. 1005–1046. doi:10.1007/978-3-319-28149-0_10. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 29 — Leander, Brian S.; Lax, Gordon; Karnkowska, Anna; Simpson, Alastair G. B. (2017). "Euglenida" (PDF). In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF) (2nd ed.). Cham: Springer International Publishing. pp. 1047–1088. doi:10.1007/978-3-319-28149-0_13. ISBN 978-3-319-28149-0. LCCN 2017945328. Retrieved 11 August 2025.
Chapter 35 — Anderson, O. Roger (2017). "Amoebozoan Lobose Amoebae (Tubulinea, Flabellinea, and Others)" (PDF). In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF) (2nd ed.). Cham: Springer International Publishing. pp. 1297–1309. doi:10.1007/978-3-319-28149-0_2. ISBN 978-3-319-28149-0. LCCN 2017945328. Retrieved 9 June 2025.
Chapter 36 — Spiegel, Frederick W.; Shadwick, Lora L.; Ndiritu, George G.; Brown, Matthew W.; Aguilar, Maria; et al. (2017). "Protosteloid amoebae (Protosteliida, Protosporangiida, Cavosteliida, Schizoplasmodiida, Fractoviteliida, and sporocarpic members of Vannellida, Centramoebida, and Pellitida)". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 2 (2nd ed.). Cham: Springer International Publishing. pp. 1311–1345. doi:10.1007/978-3-319-28149-0_12. ISBN 978-3-319-28149-0. LCCN 2017945328.
Chapter 44 — Heiss, Aaron A.; Brown, Matthew W.; Simpson, Alastair G. B. (2017). "Apusomonadida". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists (PDF). Vol. 2 (2nd ed.). Cham: Springer International Publishing. pp. 1619–1645. doi:10.1007/978-3-319-28149-0_12. ISBN 978-3-319-28149-0. LCCN 2017945328.

I

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The Illustrated Guide to the Protozoa (2000)

Volume I (pages 1–689) · Volume II (pages 690–1432)
Front matter (Taxonomic overview) — Patterson, David J. (2000). "Changing Views of Protistan Systematics: The Taxonomy of Protozoa – An Overview" (PDF). In Lee, John J.; Leedale, Gordon F.; Bradbury, Phyllis (eds.). The Illustrated Guide to the Protozoa: organisms traditionally referred to as protozoa, or newly discovered groups. Vol. I (2nd ed.). Society of Protozoologists. pp. 2–9. Retrieved 18 June 2025.

Chapter 1 — Leadbeater, Barry S.C.; Thomsen, Helge A. (2000). "Order Choanoflagellida Kent, 1880" (PDF). In Lee, John J.; Leedale, Gordon F.; Bradbury, Phyllis (eds.). The Illustrated Guide to the Protozoa: organisms traditionally referred to as protozoa, or newly discovered groups. Vol. I (2nd ed.). Society of Protozoologists. pp. 14–38. Retrieved 18 June 2025.

Chapter 2 – Lee, John J.; Leedale, Gordon F.; Bradbury, Phyllis, eds. (2000). "Phylum Microsporida Balbiani, 1882" (PDF). The Illustrated Guide to the Protozoa: organisms traditionally referred to as protozoa, or newly discovered groups. Vol. I (2nd ed.). Society of Protozoologists. Retrieved 18 June 2025.

Chapter 19 — Patterson, D. J.; Simpson, A. G. B.; Rogerson, A. (2000). "Amoebae of uncertain affinities" (PDF). In Lee, John J.; Leedale, Gordon F.; Bradbury, Phyllis (eds.). The Illustrated Guide to the Protozoa: organisms traditionally referred to as protozoa, or newly discovered groups. Vol. II (2nd ed.). Society of Protozoologists. pp. 804–827. Retrieved 18 June 2025.

Chapter 26 — Rogerson, Andrew; Patterson, David J. (2000). "The Naked Ramicristate Amoebae (Gymnamoebae)" (PDF). In Lee, John J.; Leedale, Gordon F.; Bradbury, Phyllis (eds.). The Illustrated Guide to the Protozoa: organisms traditionally referred to as protozoa, or newly discovered groups. Vol. II (2nd ed.). Society of Protozoologists. pp. 1053–1083. Retrieved 18 June 2025.

Chapter 28 — Meisterfeld, Ralf (2000). "Testate amoebae with filopodia" (PDF). In Lee, John J.; Leedale, Gordon F.; Bradbury, Phyllis (eds.). The Illustrated Guide to the Protozoa: organisms traditionally referred to as protozoa, or newly discovered groups. Vol. II (2nd ed.). Society of Protozoologists. pp. 1054–1084. Retrieved 26 December 2025.

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