| Enzyme |
PDB code |
Source |
Recognition sequence |
Cut |
Isoschizomers |
| HacI |
|
Halococcus acetoinfaciens |
5' GATC 3' CTAG |
5' --- GATC--- 3' 3' ---CTAG --- 5' |
Bme12I, Bsp67I, BstENII, CcyI, FnuEI, MgoI, NphI, Sau3AI |
| HaeI |
|
Haemophilus aegyptius |
5' WGGCCW 3' WCCGGW |
5' ---WGG CCW--- 3' 3' ---WCC GGW--- 5' |
|
| HaeII |
|
Haemophilus aegypticus |
5' RGCGCY 3' YCGCGR |
5' ---RGCGC Y--- 3' 3' ---Y CGCGR--- 5' |
| AccB2I,
| BfoI,
| Bme142I,
|
| Bsp143II, BstH2I, LpnI |
|
| HaeIII |
|
Haemophilus aegypticus |
5' GGCC 3' CCGG |
5' ---GG CC--- 3' 3' ---CC GG--- 5' |
BsuRI |
| HaeIV |
|
Haemophilus aegyptius |
5' GAYN5RTC 3' CTRN5YAG |
5' ---GAYN5RTCN8NNNNNN --- 3' 3' ---CTRN5YAGN8N NNNNN--- 5' |
|
| HalI |
|
Hafnia alvei B6 |
5' GAATTC 3' CTTAAG |
5' ---G AATTC--- 3' 3' ---CTTAA G--- 5' |
|
| HalII |
|
Hafnia alvei B6 |
5' CTGCAG 3' GACGTC |
5' ---CTGCA G--- 3' 3' ---G ACGTC--- 5' |
AjoI, AliAJI, Bsp63I, CfrA4I, CfuII, CstI, PstI, SflI, Srl5DI, Sst12I |
| HapII |
|
Haemophilus aphrophilus |
5' CCGG 3' GGCC |
5' ---C CGG--- 3' 3' ---GGC C--- 5' |
|
| HgaI[7] |
|
Haemophilus gallinarum |
5' GACGC 3' CTGCG |
5' ---GACGCN4N NNNNN--- 3' 3' ---CTGCGN4NNNNNN --- 5' |
|
| HgiI |
|
Herpetosiphon giganteus 3303 |
5' GRCGYC 3' CYGCRG |
5' ---GR CGYC--- 3' 3' ---CYGC RG--- 5' |
AcyI, AsuIII, BbiII, BstACI, HgiGI, HgiHII, Hin1I, PamII |
| HgiAI |
|
Herpetosiphon giganteus HP1023 |
5' GWGCWC 3' CWCGWG |
5' ---GWGCW C--- 3' 3' ---C WCGWG--- 5' |
| Alw21I, AspHI, Bsh45I, BsiHKAI,
|
| Bsm6I, HpyF46II,
| MspV281I |
|
| HgiBI |
|
Herpetosiphon giganteus Hpg5 |
5' GGWCC 3' CCWGG |
5' ---G GWCC--- 3' 3' ---CCWG G--- 5' |
Bme18I, BthAI, DsaIV, ErpI, FspMSI, HgiEI, Psp03I, VpaK11AI |
| HgiCI |
|
Herpetosiphon giganteus Hpg9 |
5' GGYRCC 3' CCRYGG |
5' ---G GYRCC--- 3' 3' ---CCRYG G--- 5' |
AccB1I, BanI, BspT107I, BshNI, Eco64I, HgiHI, MspB4I, PfaAI |
| HgiCII |
|
Herpetosiphon giganteus Hpg9 |
5' GGWCC 3' CCWGG |
5' ---G GWCC--- 3' 3' ---CCWG G--- 5' |
Bme18I, BthAI, DsaIV, FspMSI, HgiHIII, Psp03I, VpaK11AI |
| HgiCIII |
|
Herpetosiphon giganteus Hpg9 |
5' GTCGAC 3' CAGCTG |
5' ---G TCGAC--- 3' 3' ---CAGCT G--- 5' |
|
| HgiDI |
|
Herpetosiphon giganteus Hpa2 |
5' GRCGYC 3' CYGCRG |
5' ---GR CGYC--- 3' 3' ---CYGC RG--- 5' |
AcyI, AsuIII, BbiII, BstACI, HgiGI, HgiI, Hin1I, PamII |
| HgiDII |
|
Herpetosiphon giganteus Hpa2 |
5' GTCGAC 3' CAGCTG |
5' ---G TCGAC--- 3' 3' ---CAGCT G--- 5' |
|
| HgiEI |
|
Herpetosiphon giganteus Hpg24 |
5' GGWCC 3' CCWGG |
5' ---G GWCC--- 3' 3' ---CCWG G--- 5' |
Bme216I, BthAI, DsaIV, ErpI, FspMSI, HgiHIII, VpaK11AI |
| HgiGI |
|
Herpetosiphon giganteus Hpa1 |
5' GRCGYC 3' CYGCRG |
5' ---GR CGYC--- 3' 3' ---CYGC RG--- 5' |
AcyI, AosII, BbiII, BstACI, HgiI, HgiGI, Msp17I, PamII |
| HgiHI |
|
Herpetosiphon giganteus HP1049 |
5' GGYRCC 3' CCRYGG |
5' ---G GYRCC--- 3' 3' ---CCRYG G--- 5' |
AccB1I, BanI, BspT107I, BshNI, Eco64I, HgiCI, MspB4I, PfaAI |
| HgiHII |
|
Herpetosiphon giganteus HP1049 |
5' GRCGYC 3' CYGCRG |
5' ---GR CGYC--- 3' 3' ---CYGC RG--- 5' |
AosII, AsuIII, BsaHI, BstACI, HgiGI, HgiHII, Msp17I, PamII |
| HgiHIII |
|
Herpetosiphon giganteus HP1049 |
5' GGWCC 3' CCWGG |
5' ---G GWCC--- 3' 3' ---CCWG G--- 5' |
Bme216I, DsaIV, ErpI, HgiBI, Psp03I, VpaK11AI, VpaK11BI |
| HgiJI |
|
Herpetosiphon giganteus HFS101 |
5' GGWCC 3' CCWGG |
5' ---G GWCC--- 3' 3' ---CCWG G--- 5' |
Bme216I, CauI, DsaIV, FdiI, HgiBI, HgiHIII, Psp03I, VpaK11AI |
| HgiJII |
|
Herpetosiphon giganteus HFS101 |
5' GRGCYC 3' CYCGRG |
5' ---GRGCY C--- 3' 3' ---C YCGRG--- 5' |
|
| HgiS22I |
|
Herpetosiphon giganteus |
5' CCSGG 3' GGSCC |
5' ---CC SGG--- 3' 3' ---GGS CC--- 5' |
AhaI, AseII, AsuC2I, BcnI, CauII, Eco1831I, EcoHI, Kpn49kII |
| HhaI |
|
Haemophilus haemolyticus |
5' GCGC 3' CGCG |
5' ---GCG C--- 3' 3' ---C GCG--- 5' |
AspLEI, BspLAI, BstHHI, CfoI, FnuDIII, Hin6I, HinP1I, SciNI |
| HhaII |
|
Haemophilus haemolyticus |
5' GANTC 3' CTNAG |
5' ---G ANTC--- 3' 3' ---CTNA G--- 5' |
|
| Hin1I |
|
Haemophilus influenzae RFL1 |
5' GRCGYC 3' CYGCRG |
5' ---GR CGYC--- 3' 3' ---CYGC RG--- 5' |
AcyI, AhaII, AosII, AstWI, AsuIII, HgiI, HgiDI, HgiDI, Hsp92I |
| Hin1II |
|
Haemophilus influenzae RFL1 |
5' CATG 3' GTAC |
5' ---CATG --- 3' 3' --- GTAC--- 5' |
|
| Hin2I |
|
Haemophilus influenzae RFL2 |
5' CCGG 3' GGCC |
5' ---C CGG--- 3' 3' ---GGC C--- 5' |
|
| Hin4I |
|
Haemophilus influenzae RFL4 |
5' GAYN5VTC 3' CTRN5BAG |
5' ---GAYN5VTCN7NNNNNN --- 3' 3' ---CTRN5BAGN7N NNNNN--- 5' |
|
| Hin6I |
|
Haemophilus influenzae RFL6 |
5' GCGC 3' CGCG |
5' ---G CGC--- 3' 3' ---CGC G--- 5' |
AspLEI, BspLAI, BstHHI, CfoI, FnuDIII, HhaI, HsoI, HspAI, SciNI |
| HinJCI |
|
Haemophilus influenzae JC9 |
5' GTYRAC 3' CARYTG |
5' ---GTY RAC--- 3' 3' ---CAR YTG--- 5' |
|
| HinP1I |
2FL3 Search PDBe |
Haemophilus influenzae P1 |
5' GCGC 3' CGCG |
5' ---G CGC--- 3' 3' ---CGC G--- 5' |
BspLAI, BstHHI, CfoI, FnuDIII, HhaI, Hin6I, HsoI, HspAI, SciNI |
| HincII |
2AUD Search PDBe |
Haemophilus influenzae Rc |
5' GTYRAC 3' CARYTG |
5' ---GTY RAC--- 3' 3' ---CAR YTG--- 5' |
|
| HindII |
|
Haemophilus influenzae Rd |
5' GTYRAC 3' CARYTG |
5' ---GTY RAC--- 3' 3' ---CAR YTG--- 5' |
|
| HindIII |
2E52, Search PDBe |
Haemophilus influenzae Rd |
5' AAGCTT 3' TTCGAA |
5' ---A AGCTT--- 3' 3' ---TTCGA A--- 5' |
|
| HinfI |
|
Haemophilus influenzae Rf |
5' GANTC 3' CTNAG |
5' ---G ANTC--- 3' 3' ---CTNA G--- 5' |
|
| HjaI |
|
Hyphomonas jannaschiana |
5' GATATC 3' CTATAG |
5' ---GAT ATC--- 3' 3' ---CTA TAG--- 5' |
|
| HpaI |
|
Haemophilus parainfluenzae |
5' GTTAAC 3' CAATTG |
5' ---GTT AAC--- 3' 3' ---CAA TTG--- 5' |
|
| HpaII |
|
Haemophilus parainfluenzae |
5' CCGG 3' GGCC |
5' ---C CGG--- 3' 3' ---GGC C--- 5' |
|
| HphI |
|
Haemophilus parahaemolyticus |
5' GGTGA 3' CCACT |
5' ---GGTGAN6NN --- 3' 3' ---CCACTN6N N--- 5' |
AsuHPI, SspD5I |
| Hpy8I |
|
Helicobacter pylori A 8-5 |
5' GTNNAC 3' CANNTG |
5' ---GTN NAC--- 3' 3' ---CAN NTG--- 5' |
|
| Hpy51I |
|
Helicobacter pylori 51 |
5' GTSAC 3' CASTG |
5' --- GTSAC--- 3' 3' ---CASTG --- 5' |
|
| Hpy99I |
3GOX |
Helicobacter pylori J99 |
5' CGWCG 3' GCWGC |
5' ---CGWCG --- 3' 3' --- GCWGC--- 5' |
|
| Hpy178III |
|
Helicobacter pylori J178 |
5' TCNNGA 3' AGNNCT |
5' ---TC NNGA--- 3' 3' ---AGNN CT--- 5' |
|
| Hpy188I |
|
Helicobacter pylori J188 |
5' TCNGA 3' AGNCT |
5' ---TCN GA--- 3' 3' ---AG NCT--- 5' |
|
| Hpy188III |
|
Helicobacter pylori J188 |
5' TCNNGA 3' AGNNCT |
5' ---TC NNGA--- 3' 3' ---AGNN CT--- 5' |
|
| HpyAV |
|
Helicobacter pylori 26695 |
5' CCTTC 3' GGAAG |
5' ---CCTTCN4NN --- 3' 3' ---GGAAGN4N N--- 5' |
|
| HpyBI |
|
Helicobacter pylori Roberts |
5' GTAC 3' CATG |
5' ---GT AC--- 3' 3' ---CA TG--- 5' |
AfaI, Csp6I, CviQI, CviRII, PabI, PlaAII, RsaI, RsaNI |
| HpyBII |
|
Helicobacter pylori Roberts |
5' GTNNAC 3' CANNTG |
5' ---GTN NAC--- 3' 3' ---CAN NTG--- 5' |
|
| HpyCI |
|
Helicobacter pylori |
5' GATATC 3' CTATAG |
5' ---GAT ATC--- 3' 3' ---CTA TAG--- 5' |
|
| HpyC1I |
|
Helicobacter pylori |
5' CCATC 3' GGTAG |
5' ---CCATCNNNN N--- 3' 3' ---GGTAGNNNNN --- 5' |
|
| HpyCH4I |
|
Helicobacter pylori CH4 |
5' CATG 3' GTAC |
5' ---CATG --- 3' 3' --- GTAC--- 5' |
|
| HpyCH4III |
|
Helicobacter pylori CH4 |
5' ACNGT 3' TGNCA |
5' ---ACN GT--- 3' 3' ---TG NCA--- 5' |
|
| HpyCH4IV |
|
Helicobacter pylori CH4 |
5' ACGT 3' TGCA |
5' ---A CGT--- 3' 3' ---TGC A--- 5' |
|
| HpyCH4V |
|
Helicobacter pylori CH4 |
5' TGCA 3' ACGT |
5' ---TG CA--- 3' 3' ---AC GT--- 5' |
|
| HpyF10VI |
|
Helicobacter pylori RFL10 |
5' GCN7GC 3' CGN7CG |
5' ---GCNNNNN NNGC--- 3' 3' ---CGNN NNNNNCG--- 5' |
|
| HpyF44III |
|
Helicobacter pylori RFL44 |
5' TGCA 3' ACGT |
5' ---TG CA--- 3' 3' ---AC GT--- 5' |
|
| HsoI |
|
Haemophilus somnus 2336 |
5' GCGC 3' CGCG |
5' ---G CGC--- 3' 3' ---CGC G--- 5' |
AspLEI, BstHHI, CfoI, FnuDIII, Hin6I, HinP1I, HspAI, SciNI |
| Hsp92I |
|
Haemophilus sp. 92 |
5' GRCGYC 3' CYGCRG |
5' ---GR CGYC--- 3' 3' ---CYGC RG--- 5' |
AcyI, AhaII, AosII, AstWI, HgiI, HgiDI, HgiHII, Hin1I, Hsp92I |
| Hsp92II |
|
Haemophilus sp. 92 |
5' CATG 3' GTAC |
5' ---CATG --- 3' 3' --- GTAC--- 5' |
|
| HspAI |
|
Haemophilus sp. A |
5' GCGC 3' CGCG |
5' ---G CGC--- 3' 3' ---CGC G--- 5' |
AspLEI, BspLAI, BstHHI, FnuDIII, HhaI, Hin6I, HinP1I, HsoI, SciNI |
| HsuI |
|
Haemophilus suis |
5' AAGCTT 3' TTCGAA |
5' ---A AGCTT--- 3' 3' ---TTCGA A--- 5' |
|