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Wikipedia talk:WikiProject Plants/Archive77

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RetractionBot

I posted this story from the Signpost last month. Things have evolved a bit and now Retraction bot handles {{Erratum}}, {{Expression of concern}}, and {{Retracted}}. These populate the following categories:

  1. Herbal medicine
  2. Iris florentina
  3. Medical ethnobotany of India
  4. Medicinal plants
  5. Parthenocissus tricuspidata
  1. No plant-related articles
  1. No plant-related articles

If the citation is no longer reliable, then the article needs to be updated, which could be as minor as the removal/replacement of the citation with a reliable one, to rewriting an entire section that was based on flawed premises. If the citation to a retracted paper was intentional, like in the context of a controversy noting that a paper was later retracted, you can replace {{retraction|...}} with {{retraction|...|intentional=yes}}/{{expression of concern|...}} with {{expression of concern|...|intentional=yes}}/{{Erratum|...}} with {{Erratum|...|checked=yes}}.

I put the list of articles within the scope of WP:PLANTS in sub-bullets. Feel free to remove/strike through those you've dealt with. Headbomb {t · c · p · b} 03:12, 21 July 2024 (UTC)

In the Iris florentina case, the paper was retracted for duplication, so the retraction doesn't per se cast doubt on the results. This paper is a secondary source, citing another paper. That other paper doesn't mention Iris florentina; it sems that the wrong paper by a group of authors was cited, as a search for the compound name finds an earlier paper which does describe the identification of the relevant compound from Iris florentina. I've replaced the retracted paper by the correct primary source. Lavateraguy (talk) 09:51, 21 July 2024 (UTC)
At herbal medicine I've removed 2 of 5 citations to the retracted paper. The other 3 instances need replacement citations.
The source code for the retracted citation contains a reference to retractionwatch.com, but this doesn't show up in the HTTP of the references. Is this an issue with the bot/template? Lavateraguy (talk) 10:11, 21 July 2024 (UTC)
Medicinal plants references the same study. I've removed the sentence.
In these two instances both the study and a NY Times article based on the study were cited. I've removed the citation to the NY Times as well, but ideally we'd want to track down and remove any citations to press reports based on this (and other) retracted papers. Lavateraguy (talk) 10:46, 21 July 2024 (UTC)
In Parthenocissus tricuspidata the paper was retracted for plagiarising a few paragraphs, but these paragraphs don't affect the results of the study that are being cited. Can the the paper still be used as a reliable source? A retraction means it no longer part of the published literature, so I assume it can't.    Jts1882 | talk  10:13, 21 July 2024 (UTC)
It's bad form to cite a retracted paper, regardless of the reason why it's retracted, to establish a scientific claim. When it's duplication/failure of attribution, it doesn't make the retracted paper unreliable per se, but you can probably find a better source to support the same fact. Or, even more likely, WP:DUE applies and you don't need to talk about that specific fact. Headbomb {t · c · p · b} 10:34, 21 July 2024 (UTC)
WP:RS doesn't seem to say anything about retracted papers, unless it's on one of the many subpages. If it's not covered anywhere this may be worth an RFC. I've seen comments in various places that retracted papers still get cited in the scientific literature, even after they've been retracted, so an absolute ban in Wikipedia would be stricter than the scientific community. I can imagine that there are instances where we might want to cite retracted papers - they're a reliable source that a claim was made, even if not that the claim was correct. (I thought perhaps that LK-99 might have retracted citations, but it turns out not to.) Lavateraguy (talk) 10:38, 21 July 2024 (UTC)
An example - He_Jiankui_affair#cite_note-NAT-20190603-131 is a citation to a retracted paper which is intentionally made. It was retracted for error, and is cited as documentation of that error. Lavateraguy (talk) 11:02, 21 July 2024 (UTC)
You can certainly cite a retracted paper to talk about retracted research. I wouldn't go as far as saying it's verboten, but using a retracted paper (even if it's from a section unaffected by the retraction) to established a fact of some kind is bad form. Headbomb {t · c · p · b} 11:07, 21 July 2024 (UTC)

Display Eukaryota in taxoboxes?

Animals and fungi have displayed Eukaryota in automatic taxoboxes for the last year. Plant automatic taxoboxes do not display domain. Should they? Please discuss at Wikipedia talk:WikiProject Tree of Life#Displaying domain in plant/fungus/animal taxoboxes. Plantdrew (talk) 18:19, 22 July 2024 (UTC)

Good article reassessment for Apple

Apple has been nominated for a good article reassessment. If you are interested in the discussion, please participate by adding your comments to the reassessment page. If concerns are not addressed during the review period, the good article status may be removed from the article. Z1720 (talk) 00:12, 23 July 2024 (UTC)

Second opinion at Talk:Honeysuckle

I have an editor on Talk:Honeysuckle#redirect asking for a page move. I was apparently confused by their original request, but they have further explained the reason now, and it seems like a fully legit page move to me. From their explanation, and looking at the species pages myself, I do not see an issue with their move request. I just wanted to get a second opinion from someone more active with plant articles to confirm before I moved the page, in case y'all have any additional standards that would stop the move. - Adolphus79 (talk) 19:12, 23 July 2024 (UTC)

Calathea cylindrica?

Reviving this thread from https://en.wikipedia.org/wiki/Wikipedia_talk:WikiProject_Plants/Archive61#Calathea_cylindrica? and replying to it. (Also tagging tucoxn who appears to be the editor who asked about this.[])

An editor is asking if this flower is Calathea cylindrica. It was originally labeled as Heliconia episcopalis. Anyone familiar with this one? First Light (talk) 20:34, 20 May 2013 (UTC)

No, it looks to be Costus dubius. BlakeALee (talk) 01:16, 24 July 2024 (UTC)

Disintegration of Prosopis

I ran into this when I looked at Prosopis glandulosa. An edit was made saying it is Neltuma glandulosa. Doing a quick search on JSTOR I didn't find any recent usage of Neltuma glandulosa. It is also almost flat on Google Ngram]. On the other hand I did find a paper this year on BioOne using Neltuma glandulosa as well as one using Prosopis glandulosa. From all this I assumed there must have been a paper published somewhere and I found "Disintegration of the genus Prosopis L. (Leguminosae, Caesalpinioideae, mimosoid clade)", arguing that most of Prosophis should be Anonychium, Neltuma, or Strombocarpa. That appears to be what POWO has done (see links). It looks like they did it earlier this year. Is this a too soon or something that should be moved soon? 🌿MtBotany (talk) 22:24, 23 July 2024 (UTC)

That's one of sixteen papers in a part one of a two part special issue of PhytoKeys. My impression is that while some of the individual papers have few authors, the whole issue is something of a group effort by the community of legume specialists. The first part of the issue paves the way for the second part which is a single 552 page paper, with 48 authors, that gives a tribal classification of Caesalpinioideae. Plantdrew (talk) 00:37, 24 July 2024 (UTC)
That paper is a long read and intense, thanks Plantdrew. I've only just started reading it. 🌿MtBotany (talk) 02:54, 24 July 2024 (UTC)
The preface of the second paper confirms your impression. Together the 16 papers in issue 205 of Phytokeys (2022) and the monograph in issue 240 (2024) form parts 1 and 2, respectively, of the 14th volume of the Advances in Legume Systematics, started by Polhill and Raven in 1981.
An easy way to see the revised generic compositions is the use the treeview on the ChecklistBank upload at https://www.checklistbank.org/dataset/2304/classification?taxonKey=2536375 (May 2024). Unfortunately, they haven't included the subfamilies and tribes and just have the genus list, as with the main WCVP upload. This is the only part of WCVP that has a separate ChecklistBank upload, so I was hoping for something different.    Jts1882 | talk  10:16, 24 July 2024 (UTC)

Progress report on missing genera from PoWO, July 2024

It has been about 1.5 years since I last updated my list of missing genera from PoWO. Article creation, mostly by User:Tom Radulovich, has turned 156 redlinks blue, and there have been 3 redirects, leaving 288 redlinks. But PoWO has been listing some new or resurrected genera; so right now there are 345 redlinked genera. Abductive (reasoning) 09:34, 25 July 2024 (UTC)

Thanks for maintaining the list. Am I correct in assuming it does not account for Wikipedia articles that share a name with a plant genus, but are about a different topic? Plantdrew (talk) 16:59, 25 July 2024 (UTC)
Yeah, I have a list of the redirects (about 235) and disambigs (about 753, there are 8 that are both redirs and disams), and I have checked them in the past for errors. I will be checking again with the latest info. What I have never done is checked for mistaken redirects in the bluelinks, because there are 14,081 genera accepted by PoWO, and therefore 13,736 bluelinks. Abductive (reasoning) 18:56, 25 July 2024 (UTC)
I wasn't even thinking about "mistaken redirects in the bluelinks" although now that you mention it, that's another class of missing genera from POWO. "Mistaken redirects in the bluelinks" would be genera that are accepted by POWO, but which Wikipedia treats as a synonyms with a redirect (until it was turned into an article yesterday Senega would be one of those (at least I presume it has been accepted on POWO for some time period of time longer than the last ~36 hours)).
If you're just using link color to check for the existence of genus articles, one of the methods at Wikipedia:Visualizing redirects could help detect "mistaken redirects in the bluelinks".
What I was thinking about is cases like Ambassa, an Indian town that shares a name with the Asteraceae genus Ambassa (plant) that POWO accepts. I suppose it would possible to do some checking of cases like that via Wikidata, but that's not something I know how to do. Plantdrew (talk) 19:59, 25 July 2024 (UTC)
There are some; I just checked all genera starting with "V" that are accepted by PoWO, 160, and found one, Vandellia, a genus of catfish known for swimming up people's urethras. I posted it to WP:PAR. Abductive (reasoning) 04:49, 30 July 2024 (UTC)
Thanks for maintaining this list. I am finding it best to update or create articles on genera by focusing on one family at a time. I first use POWO to update the list of genera in the family article, or on the separate list of genera that have been created for the larger families. I then check all the links – some of the bluelinks turn out to be disambiguation links, or redirects to a genus previously considered a synonym, or to an unrelated article with the same name. Those should get sorted out, including checking 'what links here' to make sure that links are going to the right articles, and/or searching for the genus name across Wikipedia and creating or updating appropriate links. Once I update the genus article I also move the articles on renamed species to their currently accepted names, and search for synonym names across Wikipedia to create appropriate links. It can be useful to list recently-renamed species with Wikipedia articles as 'formerly placed here' in the article for the former genus in case people look for the species there. Existing articles on genera should also be checked against POWO to make sure that the synonyms and lists of species are up to date. I now doubt I'll catch up with the naming of new genera, but can do my best to make sure that the articles and lists that are already here are up-to-date, accurate, referenced, and categorized. Tom Radulovich (talk) 16:04, 29 July 2024 (UTC)

Stachybotrys chartarum

There seems to be some controversy going on over at Talk:Stachybotrys chartarum. I'm really not familiar with this topic; however, the article is quite popular and seems to need some work. It seems like this page may be particularly valuable to WP:FRINGE. I just wanted to put this on people's radar, as I know these controversial topics can cause some issues with Wikipedia pages. (Also commented on Wikipedia talk:WikiProject Fungi and Wikipedia talk:WikiProject Medicine) CursedWithTheAbilityToDoTheMath (talk) 06:07, 2 August 2024 (UTC)

Upcoming International Botanical Congress vote on "offensive" binomial names

This has been rolling along for a while, but the vote happens this week (see the recent Nature story) there are two main proposals that are being voted on:

  • 1. Replacing "caffra"-related names (which are etymologically related to an ethnic slur) to derivatives of "afr" (affects around 218 species)
  • 2. A proposal to "create a committee to reconsider offensive and culturally inappropriate names."

I've created a thread to discuss the issue at WT:TOL. Please participate there if interested. Thanks. Hemiauchenia (talk) 06:17, 17 July 2024 (UTC)

As I've noted at the TOL discussion, the first proposal has passed , so the relevant Wikipedia articles will need to be changed at some point. Hemiauchenia (talk) 19:07, 18 July 2024 (UTC)
Only if secondary sources follow this decision.    Jts1882 | talk  20:03, 18 July 2024 (UTC)
Agree. I'll check back periodically on POWO and WFO to see if they end up following this. Reading the article it will come into effect in 2026, so there will be some time before this is implemented. 🌿MtBotany (talk) 00:42, 19 July 2024 (UTC)
These probably can be mentioned on the relevant articles even though the articles won’t be moved yet. Even if the name changes aren’t accepted by the wider community, it still is relevant information. awkwafaba (📥) 03:14, 19 July 2024 (UTC)
My understanding is that the 2026 date applies to newly published names being subject to veto by a sensitivity committee. There is scope for interpretation in Nature's reporting, but I expect that the "caffra"-related changes come into force on publication of the new code (i.e. at the end of the conference). I expect that IPNI and POWO will make the changes in short order. Lavateraguy (talk) 09:31, 19 July 2024 (UTC)
People are already starting to make changes to articles as a result of the vote, see Dovyalis affra for example. I am really concerned that this is jumping the gun, so I think we need further discussion to see if there is consensus for changing the names at this time. Hemiauchenia (talk) 01:53, 21 July 2024 (UTC)

Erythrina afra and Dovyalis afra are now live at IPNI. POWO has yet to follow suit, but I doubt it will take long. Right now IPNI has just 14 records for this epithet that start with a "c". Plantdrew (talk) 00:09, 29 July 2024 (UTC)

Am I understanding this correctly? The record has been changed as if the name never existed. There is no record of the name to be used as a synonym.    Jts1882 | talk  06:21, 29 July 2024 (UTC)
IPNI has been removing orthographic variants from its database for quite a while. The rule change says the the c-forms are to be treated as orthographic variants. IPNI often gives the original spelling as a nomenclatural note when the spelling has been corrected. They do this for at least Erythrina afra, so to that degree there is a record of the other version. Lavateraguy (talk) 07:08, 29 July 2024 (UTC)
Now all of the IPNI records have been changed. There is no way to search IPNI for other spellings recorded in nomenclatural notes. I don't think that is very helpful. I'm curious how POWO is going to handle this. Plantdrew (talk) 16:23, 29 July 2024 (UTC)
Is that how we should handle these in Wikidata as well? awkwafaba (📥) 22:27, 29 July 2024 (UTC)
I don't know. It depends on what the databases linked on Wikidata do. If some of them end up maintaining records for the "c" spellings and creating new records for the c-less spellings, different Wikidata items will be needed for the different spellings. If other databases follow IPNI in changing the spelling without creating any new records, the Wikidata item should have the taxon name changed. Plantdrew (talk) 22:54, 29 July 2024 (UTC)
I was thinking we'd end up with entries for each name, with heavy use of the "Also known as" labels. awkwafaba (📥) 22:58, 29 July 2024 (UTC)
POWO and GRIN are now using the new spellings. POWO maintained their record IDs, but changed the spelling. GRIN has created new records for the new spellings. Plantdrew (talk) 15:41, 7 August 2024 (UTC)

Neopanax colensoi and Draft:Pseudopanax colensoi

Clarify guidance on exclusion of year from taxobox authority?

AfD but for Plants?

Trinomen in list of synonyms

Aster incisus or Kalimeris incisa?

Heterophylly

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Rughidia

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Chloroplast DNA

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Good article reassessment for Onion

History of discovery and cultivation

Accepted names and synonyms

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Cirsium greimleri GA assessment

Basic project question

Is this an example of De-extinction or a Lazarus taxon?

Invitation to join the WikiProject Plants Stub-to-Start Drive

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APG website?

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Is there a list of all edible plants or subsets?

Stub-to-Start Drive articles upgraded: Day 14

Good article reassessment for Carrot

Agathyrsus

Candelabra primula

Newly created category: Lithophytes

Article Little leaf of brinjal

Use of "Plants described in" category for conserved names

Archive open for lending again

Depreciating Selina Wamucii as a source

Hydrophylloideae/Hydrophyllaceae

Requested move at Talk:Cocoa bean#Requested move 7 November 2024

Category:Endangered species by reason they are threatened has been nominated for discussion

Move request for division (biology)

Flowers name

Number of orchid cultivars

Historic taxo box?

Linking taxon authors

Template for citing NatureServe Explorer

Liverworts, Bryonames, and suborders & subfamilies

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