Commelina lukei was previously confused with the similar species Commelina imberbis. While a number of morphological characters are now known which can consistently separate these two species, the most obvious ones typically did not survive on collected specimens, in particular seed, capsules, and the shape of floral organs.[1] It was later found that plants thought to be C. imberbis from coastal East Africa were in fact a separate species previously only recorded from Madagascar, namely Commelina mascarenica, which meant that this third species had also been confused with C. lukei.[1][2] The confusion was driven by the fact that C. imberbis and C. mascerenica both share certain key features with C. lukei, including leaves which clasp the stem, solitary and only slightly hairy spathes with shortly fused margins, and blue flowers. Furthermore, the capsules and seeds, while distinctive upon close inspection, are superficially quite similar.[1]
Commelina lukei had been informally recognised as a distinct species for some time, particularly when it was observed in the field because floral characters could be observed. A thorough study of the plant had not been undertaken until the time shortly before the species' publication. Robert B. Faden, the author of the paper describing the species, noted that he realised C. lukei was a new species upon collecting it in 1969, but was unable to distinguish dried herbarium specimens of the plant from the two aforementioned similar species. Eventually Faden noticed that certain specimens had needle-like, acicular hairs along the midvein on the leaves' upper surfaces, while others had mainly or only hook-hairs. Once sorted into two piles based on this character, Faden noticed that the plants with needle-like hairs also had all of their leaves clasping the stem, appendaged seeds, and capsules with a bulging apex, while those with hook-hairs only had leaves towards the tip clasping, unappendaged seeds, and broader capsules lacking an apical bulge. These characters proved sufficient for consistently separating both live and herbarium specimens.[1]
Neither Commelina imberbis nor Commelina mascarenica is most closely related to Commelina lukei. A third similar species, Commelina kotschyi, which has itself been frequently confused with C. imberbis, shares the most features with C. lukei. Both have appendaged seeds and bulging capsule apices, but C. kotschyi is an annual, has smaller leaves with undulate margins, smaller spathes that lack an upper cincinnus, and mostly hook-hairs along the upper surface of the midvein. Additionally C. kotschyi is found in upland areas in seasonally waterlogged soils and the distributions of the two species only overlap in a narrow strip.[1]
Robert Faden chose the specific epithet, "lukei", in honour of the botanist William Richard Quentin Luke. Faden wrote, "[His] collections, many made with Ann Robertson, have greatly increased our knowledge of the flora of tropical East Africa, especially Kenya, and [his] specific collections of this species, at my request, have enabled it to be illustrated from living material and have permitted the completion of its description". Luke's collection served as the type specimen for the species.[1]