Eleshnitsa monastery was studied in detail and described for the first time by Dimitar Marinov. The year of the building is still unknown. Presumably, a sanctuary was founded there by hermit-monks in 9th century. However, the monastery was established in the late 14th or early 15th century, during the reign of emperor Ivan Alexander (r. 1331–1371), when most monasteries in Sofia region were built. Proof of this is found in the marble inscription from 1499 set in the floor of the temple. There are also preserved frescoes with typical 15–16th-century stylization.[1]
The monastery was renovated and rebuilt in the 16th and 17th centuries. In 1793, the monastery was hit by invasions of kardzhalii bands. In 1799 it was restored only to be looted and destroyed again a few years later. Abbot Daniel began the renovation of the monastery in 1820, as evidenced by an inscription of the same year. The church was repaired and painted by painters from Samokov in 1864.[1]
During the Ottoman period there was a literary center with a school in the Eleshnitsa monastery.[1] A gospel and a psalter from the monastery are now kept in the National Church Historical and Archaeological Museum in Sofia.[2]
Vasil Levski used to hide in the monastery. After the defeat of Botev's rebels in early June 1876, some of the surviving men were sheltered in the monastery.[3] In the first half of the 20th century, a complete renewal of Eleshnitsa Monastery was done. During World War II, the monastery was not functioning. There has been consecutively male and female occupation. After 1966, the monastery went into decline. 1989 saw the beginning of the restoration of the monastery in the old form and style.[1]