Everyone Has a Cobblepot

Alfred (Sean Pertwee) wakes up in the hospital but refuses to tell James Gordon (Ben McKenzie) that Reggie Payne was responsible for his stabbing. In the prison's nursery, Mooney (Jada Pinkett Smith) is visited by Dr. Francis Dulmacher (Colm Feore). Mooney wants to be his second-hand, based on her experiences with Falcone (John Doman). Dulmacher gives Mooney a new sky-blue irised eye, and the opportunity to prove herself worthy of working as his right-hand woman.

Gordon discovers from Essen (Zabryna Guevara) and Dent (Nicholas D'Agosto) that Commissioner Loeb (Peter Scolari) has released Arnold Flass (Dash Mihok) from jail. When he confronts Loeb, Loeb shows him a video of the witness: Bullock (Donal Logue). Bullock was blackmailed by Loeb because on Falcone's orders, he was directed to kill a rival mobster, and unlike Gordon, he executed the man. Gordon and Dent question an ex-partner of Loeb's, Charlie Griggs (Michael J. Burg), where they get an address for a Triad bookmaker named Xi Lu (Perry Yung).

Gordon and Dent arrive at a Chinese restaurant and find Xi Lu and his bookmaking operations. When Lu denies any involvement, Dent threatens him, which prompts Lu to send his employees to kill them. They're saved by Bullock, who realizes Griggs lied to them. After nearly killing him, Griggs reveals Loeb has ties with Falcone. After receiving help from Cobblepot (Robin Lord Taylor), they arrive at a farm owned by Loeb. There, they find a couple, Jude (Dan Ziskie) and Marge (Becky Ann Baker) keeping the house. Jim and Harvey claim to be inspectors for Loeb, but Jude and Marge open fire which ends with Jude being shot by Bullock and Marge knocked unconscious.

In the attic of the farm house, they discover Loeb's daughter Miriam (Nicholle Tom) locked up. When they question her, she reveals she killed Loeb's wife years before. Gordon then visits Loeb in his office, threatening to expose his lies unless he sends Flass back to jail, and erases Bullock's history. Loeb agrees only with Bullock's terms as ratting out his other blackmailees would endanger his life.

Nygma (Cory Michael Smith) tries to ask Kringle (Chelsea Spack) for a date, but is heartbroken as he realizes she has a boyfriend, Officer Tom Dougherty (Zachary Spicer). Cobblepot brings Jude and Marge to the nightclub so they can get relocated before Loeb kills them. When Cobblepot reveals he only has one getaway ticket to Arizona, Marge kills Jude. Cobblepot then reveals that he lied and kills Marge.

Mooney later sees that Dulmacher altered the office manager's (Jeffrey Combs) body to female parts. She is later forced to give some of the inmates to Dulmacher so that they can come to terms. Later, while in his office, Mooney is shocked when she finds out the prison is on an island, making her escape even more difficult.