List of systems biology visualization software
From Wikipedia, the free encyclopedia
| Name |
Description | Site |
|---|
| GESTALT Workbench |
graphical workbench for analysis of large-scale genomic sequence data |
|
| N-Browse |
interactive graphical browser for biological networks |
|
| NetPath |
curated resource of human signal transduction pathways |
|
| MEGA |
free, online, open-source, phylogenetic analysis, drawing dendrograms etc. |
|
| REACTOME |
free, online, open-source, curated pathway database encompassing many areas of human biology |
|
| WikiPathways |
curate biological pathways |
|
| MetaboMAPS |
visualize omics data on shared metabolic pathways [1] |
|
| Name |
Description | OS | License | Site |
|---|
| BioTapestry |
interactive tool for building, visualizing, and simulating genetic regulatory networks |
multiplatform (Java-based) | LGPL | |
| Cytoscape |
data integration, network visualization, and analysis |
multiplatform (Java-based) | LGPL | |
| GenMAPP |
visualize and analyze genomic data in the context of pathways |
Windows | Apache License | |
| MATLAB |
tool for modeling, simulating, and analyzing dynamic biological systems |
Windows, Linux, macOS |
Proprietary |
|
| MEGA |
free, online, open-source, phylogenetic analysis, drawing dendrograms etc. |
Windows/DOS-Win/Mac/Linux | Shareware | |
| PathVisio |
tool for displaying and editing biological pathways |
multiplatform (Java-based) | Apache License | |
| InCroMAP |
tool for the integration of omics data and joint visualization of experimental data in pathways |
multiplatform (Java-based) | LGPL | |
| Pathview |
pathway based data integration and visualization, easy to use and integrate into pathway analysis |
multiplatform (R/Bioconductor) | GPL | |
| SBMLDiagrams[2] |
Python API to display and edit SBML layout/render extension | multiplatform | MIT | |
| Systrip |
analysis of time-series data in the context of biological networks |
Windows, Linux | LGPL, GPL | |