PKD domain

Protein domain From Wikipedia, the free encyclopedia

PKD (Polycystic Kidney Disease) domain was first identified in the polycystic kidney disease protein, polycystin-1 (PKD1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands.[1] Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein–protein and protein–carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions.

Quick facts Identifiers, Symbol ...
PKD domain
Identifiers
SymbolPKD
PfamPF00801
InterProIPR000601
SMARTPKD
SCOP21b4r / SCOPe / SUPFAM
CDDcd00146
Available protein structures:
PDB  1l0qB:353–424 2c26A:1363–1442 2c4xA:1363–1442

1b4rA:277–352 1wgoA:787–869 IPR000601 PF00801 (ECOD; PDBsum)

 
AlphaFold
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PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal S-layer proteins that protect the cell from extreme environments,[2] and in the human receptor SorCS2.[3]

Human proteins containing this domain

GPNMB; PKD1; PKD1L1; PMEL; SORCS1; SORCS2; SORCS3

References

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