La familia se divide en dos subfamilias y un cierto número de tribus.[1]
Bothremydidae
- Subfamilia Bothremydinae Gaffney et al., 2006
- Tribu Bothremydini Gaffney et al., 2006
- Iberoccitanemys Pérez-García et al., 2012[2]
- Iberoccitanemys convenarum Pérez-García et al., 2012
- Puentemys Cadena et al., 2012[3]
- Puentemys mushaisaensis Cadena et al., 2012
- Khargachelys AbdelGawad et al., 2023[4]
- Khargachelys caironensis AbdelGawad et al., 2023
- Subtribu Bothremydina Gaffney et al., 2006
- Araiochelys Gaffney et al., 2006
- Araiochelys hirayamai Gaffney et al., 2006
- Bothremys Leidy 1865 (sinónimo más moderno: Karkaemys)
- Bothremys arabicus (Zalmout et al., 2005)
- Bothremys cooki Leidy 1865
- Bothremys kellyi Gaffney et al., 2006
- Bothremys maghrebiana Gaffney et al., 2006
- Chedighaii Gaffney et al., 2006
- Chedighaii barberi (Schmidt 1940)
- Chedighaii hutchisoni Gaffney et al., 2006
- Rosasia Costa 1940
- Rosasia soutoi Carrington da Costa 1940
- Zolhafah Lapparent de Broin y Werner 1998
- Zolhafah bella Lapparent de Broin y Werner 1998
- Subtribu Foxemydina Gaffney et al., 2006
- Elochelys Nopsca 1931
- Elochelys convenarum Laurent et al., 2002
- Elochelys perfecta Nopsca 1931
- Foxemys Tong et al., 1998[5]
- Foxemys mechinorum Tong et al., 1998
- Foxemys trabanti Rabi, Tong & Botfalvai, 2012[6]
- Polysternon Portis, 1882
- Polysternon atlanticum Lapparent de Broin y Murelaga, 1996
- Polysternon isonae Marni et al., 2012[7]
- Polysternon provinciale (Matheron, 1869)
- Tribu Taphrosphyini Gaffney et al., 2006
- Subtribu Nigermydina Gaffney et al., 2006
- Arenila Lapparent de Broin y Werner 1998
- Arenila krebsi Lapparent de Broin ay Werner 1998
- Subtribu Taphrosphyina Gaffney et al., 2006
- Azabbaremys Gaffney et al., 2001
- Azabbaremys moragjonesi Gaffney et al., 2001
- Phosphatochelys Gaffney y Tong 2003
- Phosphatochelys tedfordi Gaffney y Tong 2003
- Rhothonemys Gaffney et al., 2006
- Rhothonemys brinkmani Gaffney et al., 2006
- Taphrosphys Cope 1869 (sinónimos más modernos: Amblypeza, Bantuchelys, Prochonias)
- Taphrosphys congolensis (Dollo 1912)
- Taphrosphys dares Hay 1908 (nomen dubium)
- Taphrosphys ippolitoi Gaffney et al., 2006
- Taphrosphys sulcatus (Leidy 1856)
- Ummulisani Gaffney et al., 2006
- Ummulisani rutgersensis Gaffney et al., 2006
- Crassachelys (nomen dubium)
- Crassachelys neurirregularis (Bergounioux 1952)
- Eusarkia (nomen dubium)
- Gafsachelys Stefano 1903 (nomen dubium)
- Labrostochelys Gaffney et al., 2006
- Labrostochelys galkini Gaffney et al., 2006
- Tribu Cearachelyini Gaffney et al., 2006
- Cearachelys Gaffney et al., 2001
- Cearachelys placidoi Gaffney et al., 2001
- Galianemys Gaffney et al., 2002
- Galianemys emringeri Gaffney et al., 2002
- Galianemys whitei Gaffney et al., 2002
- Subfamilia Kurmademydinae Gaffney et al., 2006
- Tribu Kurmademydini Gaffney et al., 2006
- Kinkonychelys Gaffney et al., 2009
- Kinkonychelys rogersi Gaffney et al., 2009
- Kurmademys Gaffney et al., 2001
- Kurmademys kallamedensis Gaffney et al., 2001
- Sankuchemys Gaffney et al., 2003
- Sankuchemys sethnai Gaffney et al., 2003
