C14orf93

From Wikipedia, the free encyclopedia

AliasesC14orf93, chromosome 14 open reading frame 93, RTFC
End23,010,166 bp[1]
C14orf93
Identifiers
AliasesC14orf93, chromosome 14 open reading frame 93, RTFC
External IDsMGI: 1921609; HomoloGene: 11078; GeneCards: C14orf93; OMA:C14orf93 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_028890

RefSeq (protein)

NP_083166

Location (UCSC)Chr 14: 22.99 – 23.01 MbChr 14: 54.82 – 54.84 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

C14orf93 is a protein that is encoded in humans by the C14orf93 gene. It is a globular protein with a conserved C-terminus that is localized to the nucleus. While expressed relatively highly in all tissues except nervous tissue, it is expressed particularly highly in T cells and other immune tissues.

c14orf93 is located on the short arm of chromosome 14 (14q11.2).[5] c14orf93’s accession number is 021944, and its aliases are FLJ12154 and LOC60686. The gene has 2430 bp and 7 exons.[6]

Protein

Features

The c14orf93 protein has 9 isoforms.[7] The most common and largest isoform has 538 AAs,[8] a molecular weight of 58.7 kdal,[9] and a theoretical isoelectric point of 5.7.[10] This protein is globular with a conserved C-terminus, a mixed charge cluster from 371 to 399, and a high scoring uncharged segment from 28 to 58.[9] SDSC PELE consensus data predicts 15 alpha helixes and 8 beta strands.[9]

Post-translational modifications

Post-translational modifications to c14orf93 include phosphorylation, N-acetylation, and sumoylation. Serine phosphorylation sites are predicted at 23 residues, threonine at 6 residues, and tyrosine at 2 residues.[11] There are two experimentally confirmed serine phosphorylation sites at residues 285 and 428,[6] which may serve as sites of activation or deactivation. N-acetylation is predicated at the second residue; this modification affects stability and localization.[12] There are 6 motifs with high probability of sumoylation.[13] SUMO (small ubiquitin-like modifiers) are small proteins like ubiquitin that start a cascade involved in protein stability, nuclear-cytosolic transport, and transcriptional regulation.

Subcellular localization

PSORTII data predicts that c14orf93 is localized to the nucleus.[14] There is a nuclear localization signal at residues 298-301. There are also two peroxisomal targeting signals at residues 451-459 and 479-487.

Expression

c14orf93 is expressed 2.7 times higher than the average gene across all tissues.[7] It is expressed relatively highly in all tissues except for nervous tissue.[15] There is markedly higher expression seen in T cells, and there is a slightly higher expression pattern shown in other immune tissues such as bone marrow, spleen, and lymph nodes.

Interacting Proteins

Homology

References

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