Flora (microbiology)

The terms "Flora" and "Fauna" were first used by Carl Linnaeus from Sweden in the title of his 1745^[1] work Flora Suecica and Fauna Suecica. At that time, biology was focused on macroorganisms. Later, with the advent of microscopy, the new discovered ubiquitous microorganisms were fit in this system. Then, Fauna included moving organisms (animals and protist as "micro-fauna") and Flora the organisms with apparent no movement (plants/fungi; and bacteria as "microflora"). The terms "microfauna" and "microflora" are common in old books, but recently they have been replaced by the more adequate term "microbiota".^[2] Microbiota includes Archaea, Bacteria, Fungi and Protists.

Microflora are grouped into two categories based on the origin of the microorganism.^[3]

• Autochthonous flora. - Bacteria and microorganisms native to the host environment
• Allochthonous flora. - Temporary microorganisms non-native to the host environment

Microflora is a term that refers to a community of bacteria that exist on or inside the body, and possess a unique ecological relationship with the host.^[4] This relationship encompasses a wide variety of microorganisms and the interactions between microbes. These interactions are often a mutualistic relationships between the host and autochthonous flora. Microflora responsible for harmful diseases are often allochthonous flora.

The modern term is "Microbiome" and include microorganisms that have different roles in ecosystems or hosts, including free-living organisms, or organisms associated to hosts, such animals (including humans) or plants. ^[5]