デルタプロテオバクテリア綱
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| デルタプロテオバクテリア綱 | |||||||||
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| Deltaproteobacteria Kuever et al. 2006[1] (IJSEMリストに掲載 2006)[2] | |||||||||
| タイプ属 | |||||||||
| ミクソコッカス属 Myxococcus Thaxter 1892[3] (IJSEMリストに掲載 1980)[4] 修正 Lang & Stackebrandt 2009[5] (IJSEMリストに掲載 1980)[6] | |||||||||
| シノニム | |||||||||
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| 下位分類(目) | |||||||||
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本文を参照 |
デルタプロテオバクテリア綱（デルタプロテオバクテリアこう、Deltaproteobacteria）は、真正細菌のPseudomonadota門の綱の一つである。この綱に含まれるすべての種は、他のすべてのPseudomonadota門メンバーと同様に、グラム陰性である。
IJSEMに正式に承認されている目
- Wang et al. 2015[17] (IJSEMリストに掲載 2015)[18]
- タイプ属はBradymonasである。
- Bradymonadaceae
- BradymonasやLujinxingiaなどを含む。
- Microvenatoraceae
- Microvenatorのみを含む。
- Waite et al. 2020[7] (IJSEMリストに掲載 2021)[9]
- タイプ属はDeferrisomaである。
- Deferrisomaのみを含むDeferrisomataceaeのみで構成される。
- corrig. Kuever et al. 2006[19] (IJSEMリストに掲載 2006)[2]
- タイプ属はDesulfarculus（デスルファルクルス属）である。
- DesulfarculusやDesulfocarboなどを含むDesulfarculaceae（デスルファルクルス科）のみで構成される。
- Kuever et al. 2006[20] (IJSEMリストに掲載 2006)[2]、修正 Waite et al. 2020[7] (IJSEMリストに掲載 2021)[9]
- タイプ属はDesulfobacter（デスルフォバクター属）である。
- DesulfobacterやDesulfonema（デスルフォネーマ属）、Desulfosarcina（デスルフォサルシナ属）、Desulfobacterium（デスルフォバクテリウム属）、Desulfospira（デスルフォスピラ属）などを含む。
- Desulfobulbus（デスルフォバルブス属）、Desulfocapsa（デスルフォカプサ属）、Desulfofustis（デスルフォフスチス属）、Desulfotalea（デスルフォタレア属）などを含む。
- Desulfosudisのみを含む。
- Thiovibrioのみを含む。
- Kuever et al. 2006[21] (IJSEMリストに掲載 2006)[2]、修正 Waite et al. 2020[7] (IJSEMリストに掲載 2021)[9]
- タイプ属はDesulfovibrio（デスルフォビブリオ属）である。
- Desulfohalobium（デスルフォハロビウム属）、Desulfonatronovibrio（デスルフォナトロノビブリオ属）、Desulfonauticus（デスルフォナウティカス属）などを含む。
- Desulfomicrobium（デスルフォミクロビウム属）、Desulfoplanes（デスルフォプラネス属）などを含む。
- Desulfonatronum（デスルフォナトロヌム属）のみを含む。
- Kuever et al. 2006[22] (IJSEMリストに掲載 2006)[2]、修正 Waite et al. 2017[14]
- タイプ属はDesulfurella（デスルフレラ属）である。DesulfurellaとHippea（ヒッピア属）のみを含むDesulfurellaceae（デスルフレラ科）のみで構成される。
- corrig. Kuever et al. 2006[23] (IJSEMリストに掲載 2006)[2]、修正 Waite et al. 2020[7] (IJSEMリストに掲載 2021)[9]
- タイプ属はDesulfuromonas（デスルフロモナス属）である。
- Geobacter（ゲオバクター属）、Geopsychrobacter（ゲオサイクロバクター属）、Geothermobacter（ゲオサーモバクター属）などを含む。
- Syntrophotaleaのみを含む。
- Waite et al. 2020[7] (IJSEMリストに掲載 2021)[9]
- Dissulfuribacter（デスルフリバクター属）のみを含むDissulfuribacteraceae（デスルフリバクター科）のみで構成される。
- Tchan et al. 1948[24] (IJSEMリストに掲載 1980)[4]、修正 Waite et al. 2020[7] (IJSEMリストに掲載 2021)[9]
- タイプ属はMyxococcus（ミクソコッカス属）である。
- Myxococcus、Corallococcus（コラロコッカス属）、Pyxidicoccus（ピキシディコッカス属）などを含む。
- Anaeromyxobacter（アナエロミュクソバクテル属）のみを含む。
- Archangium（アーキアンギウム属）、Angiococcus（アンギオコッカス属）、Cystobacter（シストバクター属）、Melittangium（メリタンギウム属）、Stigmatella（スチグマテラ属）などを含む。
- Nannocystis（ナンノシスチス属）、Enhygromyxa（エンハイグロミクサ属）、Plesiocystis（プレシオシスチス属）などを含む。
- Sandaracinus（サンダラキナキヌス属）のみを含む。
- Vulgatibacterのみを含む。
- Kuever et al. 2006[25] (IJSEMリストに掲載 2006)[2]、修正 Waite et al. 2020[7] (IJSEMリストに掲載 2021)[9]
- タイプ属はSyntrophobacter（シントロフォバクター属）である。
- Syntrophobacter、Desulfacinum（デスルファシヌム属）、Desulforhabdus（デスルフォラブダス属）、Desulfovirga（デスルフォビルガ属）、Thermodesulforhabdus（サーモデスルフォラブダス属）などを含む。
- Waite et al. 2020[7] (IJSEMリストに掲載 2021)[9]
- Syntrophorhabdus（シントロフォラブダス属）のみを含むSyntrophorhabdaceae（シントロフォラブダス科）のみで構成される。
Candidatus
- "Candidatus Acidulidesulfobacterales"
- corrig. Tan et al. 2019[26] (IJSEMリストに掲載 2021)[27]
- "Candidatus Acidulidesulfobacter"のみを含む"Candidatus Acidulidesulfobacteraceae"のみで構成される。
- "Candidatus Adiutricales"
- Waite et al. 2020[7] (IJSEMリストに掲載 2022)[8]
- "Candidatus Adiutrix"のみを含む"Candidatus Adiutricaceae"のみで構成される。
- "Candidatus Desulfofervidales"
脚注
[脚注の使い方]
- ↑ Kuever J, Rainey FA, Widdel F (2005). “Class IV. Deltaproteobacteria class. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). New York: Springer. p. 922
- 1 2 3 4 5 6 7 “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology: 1-6. (01 January 2006). doi:10.1099/ijs.0.64188-0.
- ↑ Roland Thaxter (1892). “On the Myxobacteriaceæ, a New Order of Schizomycetes”. Botanical Gazette 17 (12): 389-406. doi:10.1086/326866.
- 1 2 V. B. D. Skerman, Vicki. McGOWAN and P. H. A. Sneath (1: Department of Microbiology, University of Queensland, St. Lucia, Queensland 4067, Australia. 2: MRC Microbial Systematics Unit, University of Leicester, Leicester LE1 England 7RH) (01 January 1980). “Approved Lists of Bacterial Names”. International Journal of Systematic and Evolutionary Microbiology 30 (1): 225-420. doi:10.1099/00207713-30-1-225.
- ↑ Elke Lang1 and Erko Stackebrandt1 (1: DSMZ – Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Inhoffenstr. 7B, 38124 Braunschweig Germany) (01 August 2009). “Emended descriptions of the genera Myxococcus and Corallococcus, typification of the species Myxococcus stipitatus and Myxococcus macrosporus and a proposal that they be represented by neotype strains. Request for an Opinion”. International Journal of Systematic and Evolutionary Microbiology 59 (8): 2122-8. doi:10.1099/ijs.0.003566-0. PMID 19567579.
- ↑ “Notification that new names and new combinations have appeared in volume 59, part 8, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 59 (11): 2649-2650. (01 November 2009). doi:10.1099/ijs.0.019158-0.
- 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 David W Waite 1 2, Maria Chuvochina 2, Claus Pelikan 3, Donovan H Parks 2, Pelin Yilmaz 4, Michael Wagner 3, Alexander Loy 3, Takeshi Naganuma 5, Ryosuke Nakai 6, William B Whitman 7, Martin W Hahn 8, Jan Kuever 9, Philip Hugenholtz 2 (1: School of Biological Sciences, University of Auckland, Auckland, New Zealand. 2: Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, Australia. 3: University of Vienna, Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology, Vienna, Austria. 4: b.experts GmbH Dortmund, Germany. 5: Hiroshima University, Hiroshima, Japan. 6: Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Sapporo, Hokkaido, Japan. 7: Department of Microbiology, University of Georgia, Athens, Georgia, USA. 8: Research Department for Limnology, University of Innsbruck, Mondsee, Austria. 9: Department of Microbiology, Bremen Institute for Materials Testing, Bremen, Germany.) (05 November 2020). “Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities”. International Journal of Systematic and Evolutionary Microbiology 70 (11): 5972-6016. doi:10.1099/ijsem.0.004213. PMID 33151140.
- 1 2 3 Aharon Oren1ORCID icon and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel. 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA.) (31 January 2022). “CANDIDATUS LIST No. 3. Lists of names of prokaryotic Candidatus taxa”. International Journal of Systematic and Evolutionary Microbiology 72 (1): 5186. doi:10.1099/ijsem.0.005186.
- 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel. 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA.) (26 February 2021). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 70, part 11 of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 71 (2): 4645. doi:10.1099/ijsem.0.004645.
- ↑ Maria Chuvochina 1, Aaron J Mussig 1, Pierre-Alain Chaumeil 1, Adam Skarshewski 1, Christian Rinke 1, Donovan H Parks 1, Philip Hugenholtz 1 (1: The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics,, St Lucia QLD 4072, Brisbane, Australia.) (21 July 2023). “Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes”. FEMS Microbiology Letters 370: fnad071. doi:10.1093/femsle/fnad071. PMC 10408702. PMID 37480240. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10408702/.
- ↑ Aharon Oren1ORCID icon and Markus Göker2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel. 2: Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, 38124 Braunschweig, Germany.) (01 February 2024). “Validation List no. 215. Valid publication of new names and new combinations effectively published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 74 (1): 6173. doi:10.1099/ijsem.0.006173.
- ↑ T Cavalier-Smith (1: Department of Zoology, University of Oxford, UK.) (01 January 2002). “The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification”. International Journal of Systematic and Evolutionary Microbiology 52 (1): 7-76. doi:10.1099/00207713-52-1-7. PMID 11837318.
- ↑ “Notification that new names and new combinations have appeared in volume 52, part 1, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 52 (2): 293-295. (01 March 2002). doi:10.1099/00207713-52-2-293.
- 1 2 David W Waite 1, Inka Vanwonterghem 1, Christian Rinke 1, Donovan H Parks 1, Ying Zhang 2, Ken Takai 3, Stefan M Sievert 4, Jörg Simon 5, Barbara J Campbell 6, Thomas E Hanson 7, Tanja Woyke 8, Martin G Klotz 9 10, Philip Hugenholtz 1 (1: Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St LuciaQLD, Australia. 2: Department of Cell and Molecular Biology, College of the Environment and Life Sciences, University of Rhode Island, KingstonRI, USA. 3: Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and TechnologyYokosuka, Japan. 4: Department of Biology, Woods Hole Oceanographic Institution, Woods HoleMA, USA. 5: Microbial Energy Conversion and Biotechnology, Department of Biology, Technische Universität DarmstadtDarmstadt, Germany. 6: Department of Biological Sciences, Life Science Facility, Clemson University, ClemsonSC, USA. 7School of Marine Science and Policy, College of Earth, Ocean, and Environment, Delaware Biotechnology Institute, University of Delaware, NewarkDE, USA. 8: Department of Energy, Joint Genome Institute, Walnut CreekCA, USA. 9: Department of Biology and School of Earth and Environmental Sciences, Queens College of the City University of New York, New YorkNY, USA. 10: State Key Laboratory of Marine Environmental Science, Institute of Marine Microbes and Ecospheres, College of Ocean and Earth Sciences, Xiamen UniversityXiamen, China.) PMID=28484436 (24 April 2017). “Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)”. Frontiers in Microbiology 8: 682. doi:10.3389/fmicb.2017.00682. PMC 5401914. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5401914/.
- ↑ Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel. 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA.) (29 May 2020). “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology 70 (5): 2960-2966. doi:10.1099/ijsem.0.004156.
- ↑ Jean P. Euzéby, Aidan C. Parte. “Class Deltaproteobacteria”. List of Prokaryotic names with Standing in Nomenclature (LPSN). 2024年9月23日閲覧。
- ↑ Zong-Jie Wang 1, Qian-Qian Liu 1, Li-Hua Zhao 1, Zong-Jun Du 2 1, Guan-Jun Chen 2 1 (1: College of Marine Science, Shandong University at Weihai, Weihai 264209, PR China. 2: State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, PR China.) (01 May 2015). “Bradymonas sediminis gen. nov., sp. nov., isolated from coastal sediment, and description of Bradymonadaceae fam. nov. and Bradymonadales ord. nov.”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_5): 1542-1549. doi:10.1099/ijs.0.000135. PMID 25713043.
- ↑ Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 91904 Jerusalem, Israel. 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI, 48824-4320, USA.) (01 August 2015). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 65, part 5, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_8): 2343-2344. doi:10.1099/ijsem.0.000413.
- ↑ Kuever J, Rainey FA, Widdel F (2005). “Order IV. Desulfarcales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). New York: Springer. p. 1003
- ↑ Kuever J, Rainey FA, Widdel F (2005). “Order III. Desulfobacterales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). New York: Springer. p. 959
- ↑ Kuever J, Rainey FA, Widdel F (2005). “Order II. Desulfovibrionales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). New York: Springer. pp. 925-926
- ↑ Kuever J, Rainey FA, Widdel F (2005). “Order I. Desulfurellales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). New York: Springer. p. 922
- ↑ Kuever J, Rainey FA, Widdel F (2005). “Order V. Desulfuromonales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). New York: Springer. pp. 1005-1006
- ↑ Tchan YT, Pochon J, Prévot AR (1948). Etude de systématique bactérienne. VIII. Essai de classification des Cytophaga. 74. 394-400
- ↑ Kuever J, Rainey FA, Widdel F (2005). “Order VI. Syntrophobacterales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). New York: Springer. p. 1021
- ↑ Sha Tan # 1, Jun Liu # 1 2, Yun Fang # 3, Brian P Hedlund 4 5, Zheng-Han Lian 1 6, Li-Ying Huang 1, Jin-Tian Li 7, Li-Nan Huang 1, Wen-Jun Li 1, Hong-Chen Jiang 3, Hai-Liang Dong 8 9, Wen-Sheng Shu 10 (1: State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China. 2: Department of Geology and Environmental Earth Science, Miami University, Oxford, OH, 45056, USA. 3: State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074, Wuhan, China. 4: School of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, 89154, USA. 5: Nevada Institute of Personalized Medicine, University of Nevada Las Vegas, Las Vegas, NV, 89154, USA. 6: Guangdong Magigene Biotechnology Co. Ltd., 510000, Guangzhou, China. 7: School of Life Sciences, South China Normal University, 510631, Guangzhou, China. 8: Department of Geology and Environmental Earth Science, Miami University, Oxford, OH, 45056, USA. 9: State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 100083, Beijing, China. 10: School of Life Sciences, South China Normal University, 510631, Guangzhou, China. #筆頭著者) PMID=30962514 (08 April 2019). “Insights into ecological role of a new deltaproteobacterial order Candidatus Acidulodesulfobacterales by metagenomics and metatranscriptomics”. The ISME Journal 13 (8): 2044–2057. doi:10.1038/s41396-019-0415-y. PMC 6776010. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6776010/.
- ↑ Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel. 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (21 April 2021). “Candidatus List No. 2. Lists of names of prokaryotic Candidatus taxa”. International Journal of Systematic and Evolutionary Microbiology 71 (4): 4671. doi:10.1099/ijsem.0.004671.