PABPC1

Protein-coding gene in the species Homo sapiens From Wikipedia, the free encyclopedia

Polyadenylate-binding protein 1 is a protein that in humans is encoded by the PABPC1 gene.[5] The protein PABP1 binds mRNA and facilitates a variety of functions such as transport into and out of the nucleus, degradation, translation, and stability. There are two separate PABP1 proteins, one which is located in the nucleus (PABPN1) and the other which is found in the cytoplasm (PABPC1). The location of PABP1 affects the role of that protein and its function with RNA.[6]

PDBOrtholog search: PDBe RCSB
AliasesPABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1, poly(A) binding protein cytoplasmic 1
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PABPC1
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesPABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1, poly(A) binding protein cytoplasmic 1
External IDsOMIM: 604679; MGI: 1349722; HomoloGene: 37638; GeneCards: PABPC1; OMA:PABPC1 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_002568

NM_008774

RefSeq (protein)

NP_002559

NP_032800

Location (UCSC)Chr 8: 100.69 – 100.72 MbChr 15: 36.6 – 36.61 Mb
PubMed search[3][4]
Wikidata
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Function

The poly(A)-binding protein (PAB or PABP), which is found complexed to the 3' poly(A) tail of eukaryotic mRNA, is required for poly(A) lengthening and the termination of translation. In humans, the PABPs comprise a small nuclear isoform and a conserved gene family of other poly(A)-binding proteins.[7]

PABPC1 is usually diffused within the cytoplasm and concentrated at sites of high mRNA concentration such as stress granules, processing bodies, and locations of high translational activity. PABPC1 is also associated with nonsense-mediated mRNA decay (NMD). PABPC1 binds to the poly(A) tail and interact with eIF4G, which stabilizes the circularization of mRNAs. This structure is required for the prevention of mRNA degradation via NMD.[8]

In the nucleus PABP1 binds to the poly(A) tails of pre-mRNAs to facilitate stability, export, transport, and degradation. PABP1 binding is also required for Nonsense-mediated decay. PABPC1 contains four RNA-recognition motifs (RRMs). The first two, RRM1 and RRM2, bind both α-importin and the poly(A) tail of processed mRNA. This feature prevents mRNA from going back into the nucleus.[6]

Interactions

References

Further reading

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