SOX17

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PDBOrtholog search: PDBe RCSB
AliasesSOX17, VUR3, SRY-box 17, SRY-box transcription factor 17
SOX17
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesSOX17, VUR3, SRY-box 17, SRY-box transcription factor 17
External IDsOMIM: 610928; MGI: 107543; HomoloGene: 7948; GeneCards: SOX17; OMA:SOX17 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_022454

NM_001289464
NM_001289465
NM_001289466
NM_001289467
NM_011441

RefSeq (protein)

NP_071899

NP_001276393
NP_001276394
NP_001276395
NP_001276396
NP_035571

Location (UCSC)Chr 8: 54.46 – 54.46 MbChr 1: 4.56 – 4.57 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

SRY-box 17 is a protein that in humans is encoded by the SOX17 gene. [5]

The gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors, located on Chromosome 8 q11.23. Its gene body is isolated within a CTCF loop domain.[6][7][8] Approximately 230 kb upstream of SOX17 it has been identified a tissue specific differentially (hypo-)methylated region (DMR), which consists of SOX17 regulatory elements.[9][10] The DMR in particular bears the most distal definitive endoderm-specific enhancer at the SOX17 locus.[11] SOX17 itself has recently been defined as so called topologically insulated gene (TIG). TIGs per definition are single protein coding genes (PCGs) within CTCF loop domains, that are mainly enriched in developmental regulators and suggested to be very tightly controlled via their 3D loop-domain architecture.[12]

Function in development

References

Further reading

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